View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_low_7 (Length: 324)
Name: NF13886_low_7
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 4649743 - 4649446
Alignment:
| Q |
13 |
aatatataggctaaaatcatatttcaaatcagaagaacaattaagttttatttcttaaaaaacacttgaaacacatgtgtatgcaagttatgggttgaga |
112 |
Q |
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| T |
4649743 |
aatatagaggctaaaatcatatttcaaatcagaagaacaattaagttttatttcttaaaaaacactcgaaacacatgtgtatgcaagttatgggttgaga |
4649644 |
T |
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| Q |
113 |
aattaagttgaacttacgaagaattgtttaaaatacaaccgtgacatgtgtaaaacaaccacggccaaatgcttttgtcttgggttcaacttccacnnnn |
212 |
Q |
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| T |
4649643 |
aattaagttgaacttacaaagaattgtttaaaatacaaccgtgacatgtgtaaaacaaccaagaccaaatgctttcatcttgggtgcaacttccactttt |
4649544 |
T |
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| Q |
213 |
nnnnnnnnnnnnnnnagcatgataagatttcaatttgagccaaatttaaggaagaatagagtattgaggacatataaactttaaatccatgataaatt |
310 |
Q |
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| T |
4649543 |
ttaattaatttttttagcatgataagattccaatttgagccgaatttaaggaagaatagagtattgaggacatataaactttaaatccatgataaatt |
4649446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 5572979 - 5573027
Alignment:
| Q |
53 |
ttaagttttatttcttaaaaaac-acttgaaacacatgtgtatgcaagt |
100 |
Q |
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| T |
5572979 |
ttaagttttatttgttaaaaaaatacttgaaacacatgtgtatgcaagt |
5573027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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