View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13886_low_8 (Length: 301)
Name: NF13886_low_8
Description: NF13886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13886_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 12838386 - 12838650
Alignment:
| Q |
18 |
cttttgatatcttggtgtatgaagcaatgcaattatctaaagcagctttcagttgtatgtccttggtttgcgcttgaacagtttgaagttgatgtaatac |
117 |
Q |
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| T |
12838386 |
cttttgatatcttggtgtatgaagcaatgcaattatccaaagcagctttcagttgtatgtccttggtttgcgcttgaacagtttgaagttgatgtaatat |
12838485 |
T |
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| Q |
118 |
gaccggtgctcttgtcgcgacaaccttgagtgttacgcggacaaatccagagatgtcggtatttgatgcaatatactttactgcatataaatttgatttt |
217 |
Q |
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| T |
12838486 |
gaccggtgctcttgtcgcgacaaccttgagtgttacacgaacaaatccagagatgtcagtatttgatgcaatatactttactgcatataaatttgatttt |
12838585 |
T |
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| Q |
218 |
aatgttataacacaaagatggtaatgaggtgtttttcgacatatagctttaattaagtctagctt |
282 |
Q |
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| T |
12838586 |
aatgttataacgcaaagatggtaatgaggtgtttttcgacatatagctttaattaagtctagctt |
12838650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 12831559 - 12831823
Alignment:
| Q |
18 |
cttttgatatcttggtgtatgaagcaatgcaattatctaaagcagctttcagttgtatgtccttggtttgcgcttgaacagtttgaagttgatgtaatac |
117 |
Q |
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| T |
12831559 |
cttttgatatcttggtgtatgaagcaatgcaattatccaaagcagctttcagttgtatgtccttggtttgcacttgaacagtttgaagttgatgtaatat |
12831658 |
T |
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| Q |
118 |
gaccggtgctcttgtcgcgacaaccttgagtgttacgcggacaaatccagagatgtcggtatttgatgcaatatactttactgcatataaatttgatttt |
217 |
Q |
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| T |
12831659 |
gaccggtgctcttgtcgcgacaaccttgagtgttacacgaacaaatccagagatgtcagtatttgatgcaatatactttactgcatataaatttgatttt |
12831758 |
T |
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| Q |
218 |
aatgttataacacaaagatggtaatgaggtgtttttcgacatatagctttaattaagtctagctt |
282 |
Q |
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| T |
12831759 |
aatgttataacgcaaagatggtaatgaggtgtttttcgacatatagctttaatcaagtctagctt |
12831823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 12812489 - 12812608
Alignment:
| Q |
18 |
cttttgatatcttggtgtatgaagcaatgcaattatctaaagcagctttcagttgtatgtccttggtttgcgcttgaacagtttgaagttgatgtaatac |
117 |
Q |
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| T |
12812489 |
cttttgatatcttggtgtatgaagcaatgcaattatccaaagcagctttcagtcgcatgtccttggtttgcg-ttgaacagtttgaagttgctttaatat |
12812587 |
T |
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| Q |
118 |
gaccggtgctcttgtcgcgac |
138 |
Q |
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| T |
12812588 |
gaccggtgctcttgtcgcgac |
12812608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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