View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13887_high_1 (Length: 435)

Name: NF13887_high_1
Description: NF13887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13887_high_1
NF13887_high_1
[»] chr5 (6 HSPs)
chr5 (1-232)||(28122302-28122533)
chr5 (285-419)||(28122115-28122249)
chr5 (151-192)||(28637632-28637672)
chr5 (149-190)||(37634396-37634437)
chr5 (136-192)||(21027040-21027095)
chr5 (136-192)||(22602055-22602110)
[»] chr3 (4 HSPs)
chr3 (114-231)||(8709595-8709709)
chr3 (114-231)||(9061482-9061596)
chr3 (142-192)||(3736486-3736535)
chr3 (169-210)||(18385305-18385346)
[»] chr6 (5 HSPs)
chr6 (117-201)||(1711180-1711264)
chr6 (147-190)||(4790186-4790229)
chr6 (141-192)||(9351148-9351198)
chr6 (143-210)||(25823566-25823633)
chr6 (130-192)||(12435947-12436008)
[»] chr4 (2 HSPs)
chr4 (112-191)||(19424827-19424906)
chr4 (130-192)||(11485221-11485282)
[»] chr2 (7 HSPs)
chr2 (117-196)||(35795805-35795883)
chr2 (142-192)||(20632469-20632518)
chr2 (149-186)||(21862602-21862639)
chr2 (136-192)||(15718819-15718874)
chr2 (136-192)||(20374141-20374196)
chr2 (129-189)||(28581159-28581219)
chr2 (141-217)||(40926460-40926535)
[»] scaffold0741 (1 HSPs)
scaffold0741 (149-190)||(6758-6799)
[»] scaffold0065 (1 HSPs)
scaffold0065 (149-190)||(42861-42902)
[»] chr8 (4 HSPs)
chr8 (141-192)||(16290860-16290910)
chr8 (142-192)||(14413342-14413391)
chr8 (131-192)||(43856112-43856172)
chr8 (136-192)||(18695520-18695575)
[»] scaffold0363 (1 HSPs)
scaffold0363 (142-192)||(5320-5369)
[»] scaffold0001 (1 HSPs)
scaffold0001 (147-192)||(20696-20740)
[»] chr7 (9 HSPs)
chr7 (149-186)||(19160487-19160524)
chr7 (149-186)||(20759886-20759923)
chr7 (149-190)||(26178065-26178106)
chr7 (151-192)||(37375023-37375063)
chr7 (136-192)||(1862351-1862406)
chr7 (117-193)||(7315149-7315225)
chr7 (136-192)||(12163394-12163449)
chr7 (169-209)||(22980560-22980600)
chr7 (136-192)||(38993121-38993176)
[»] scaffold0062 (1 HSPs)
scaffold0062 (136-192)||(67376-67431)
[»] scaffold0007 (1 HSPs)
scaffold0007 (136-192)||(173867-173922)
[»] chr1 (3 HSPs)
chr1 (136-192)||(18332725-18332780)
chr1 (136-192)||(21487860-21487915)
chr1 (151-191)||(41917092-41917131)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 28122533 - 28122302
Alignment:
Q  1 tcatcagcaaacttaatgtggtaaggtattttgggaggtgataagttatagatgagggaggagttactagctataaaatcaaaagctcaagaatctgaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28122533 tcattagcaaacttaatgtggtaaggtattttgggaggtgacaagttatagatgagtgaggagttactagctataaaatcaaaagctcaagaatctgaaa 28122434  T
Q  101 accaagatcccacttgtttaataatatttattttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtctgaggttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28122433 accaagatcccacttgtttaataatatttattttatgaggttggcggcagaggatgggggtttctcaggggtgccaacctagttgggatgtctgaggttc 28122334  T
Q  201 tccctgatgcatgtcctcctcttaattcagct 232  Q
    ||||||||||||||||||||||||||||||||    
T  28122333 tccctgatgcatgtcctcctcttaattcagct 28122302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 285 - 419
Target Start/End: Complemental strand, 28122249 - 28122115
Alignment:
Q  285 gactgatgagtaaaacttgttagactgccatcaaactacaaacaataataagccttgagtgagtaaaagtgagtatagagaggcatcacacattaatgcc 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28122249 gactgatgagtaaaacttgttagactgccatcaaactacaaacaataataagccttgagtgagtaaaagtgagtatagagaggcatcacacattaatgcc 28122150  T
Q  385 aaaggaaaaaagcagccacacaaaaaccaaaatag 419  Q
    ||||||||||||||||||| |||||||||||||||    
T  28122149 aaaggaaaaaagcagccacgcaaaaaccaaaatag 28122115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 28637632 - 28637672
Alignment:
Q  151 aggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  28637632 aggatgggggttcctc-ggggtgccaacctagttgggatgtc 28637672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 37634437 - 37634396
Alignment:
Q  149 agaggatgggggtttctcaggggtgccaacctagttgggatg 190  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  37634437 agaggatgggggtttctgtgggatgccaacctagttgggatg 37634396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 21027095 - 21027040
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||| ||| |||||||||||| ||  |||||||||||||||||||||||||    
T  21027095 tgagtttggcggcataggatgggggtt-ctgcggggtgccaacctagttgggatgtc 21027040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 22602110 - 22602055
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||||||| | ||| |||||||||||| ||  |||||||||||||||||||||||||    
T  22602110 tgaggttgacggcataggatgggggtt-ctgcggggtgccaacctagttgggatgtc 22602055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 8709709 - 8709595
Alignment:
Q  114 ttgtttaataatatttattttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtctgaggttctccctgatgcatg 213  Q
    |||||||||||||||||||||||| ||||||  ||| ||||| |||  || | ||||||| |||||||  || ||||| ||||||||||||| |||||||    
T  8709709 ttgtttaataatatttattttatgtggttggtggcaaaggataggg--tttttaggggtgtcaacctacatgagatgtatgaggttctccct-atgcatg 8709613  T
Q  214 tcctcctcttaattcagc 231  Q
    |||| ||||| |||||||    
T  8709612 tccttctcttgattcagc 8709595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 9061596 - 9061482
Alignment:
Q  114 ttgtttaataatatttattttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtctgaggttctccctgatgcatg 213  Q
    |||||||||||||||||||||||| ||||||  ||| ||||| |||  || | ||||||| |||||||  || ||||| ||||||||||||| |||||||    
T  9061596 ttgtttaataatatttattttatgtggttggtggcaaaggataggg--tttttaggggtgtcaacctacatgagatgtatgaggttctccct-atgcatg 9061500  T
Q  214 tcctcctcttaattcagc 231  Q
    |||| ||||| |||||||    
T  9061499 tccttctcttgattcagc 9061482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 3736486 - 3736535
Alignment:
Q  142 tggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  3736486 tggcagcagaggatggaggtgtctc-ggggtgccaacctagttgggatgtc 3736535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 18385346 - 18385305
Alignment:
Q  169 gggtgccaacctagttgggatgtctgaggttctccctgatgc 210  Q
    ||||||||||||||||||||||| | || |||||||||||||    
T  18385346 gggtgccaacctagttgggatgtttcagcttctccctgatgc 18385305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 1711264 - 1711180
Alignment:
Q  117 tttaataatatttattttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtctgaggttct 201  Q
    |||| |||||||||||||||||||||||| |||||||||    ||| ||||  | ||||||||||||| ||||||||| ||||||    
T  1711264 tttattaatatttattttatgaggttggcggcagaggataaaagttcctcaaagatgccaacctagttaggatgtctgtggttct 1711180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 4790229 - 4790186
Alignment:
Q  147 gcagaggatgggggtttctcaggggtgccaacctagttgggatg 190  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  4790229 gcagaggatggaggtttctgtggggtgccaacctagttgggatg 4790186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 9351198 - 9351148
Alignment:
Q  141 ttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    ||||| ||| ||||||| |||||||| |||||||||||||||||||||||||    
T  9351198 ttggcggcataggatggaggtttctc-ggggtgccaacctagttgggatgtc 9351148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 25823566 - 25823633
Alignment:
Q  143 ggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtctgaggttctccctgatgc 210  Q
    ||||| || ||||||||||||||  ||||||||||||||||||| ||| || || ||||||| |||||    
T  25823566 ggcagtagcggatgggggtttctgtggggtgccaacctagttggaatgcctcagattctcccggatgc 25823633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 12435947 - 12436008
Alignment:
Q  130 attttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    ||||| |||| ||||| ||| ||||||| ||||| || |||||||||||||||||||||||||    
T  12435947 attttttgagcttggcggcataggatggaggtttgtc-ggggtgccaacctagttgggatgtc 12436008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 19424906 - 19424827
Alignment:
Q  112 acttgtttaataatatttattttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgt 191  Q
    |||| |||||| || |||||||||||| |||||| | |||||||| ||||||||| ||| |||||||||| |||| ||||    
T  19424906 acttttttaatgatgtttattttatgacgttggcgggagaggatgagggtttctcggggatgccaacctaattggaatgt 19424827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 11485282 - 11485221
Alignment:
Q  130 attttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||||||||| ||||| ||| ||||||| ||  |||| |||||||||||||||||||||||||    
T  11485282 attttatgagtttggcggcataggatggaggcctctc-ggggtgccaacctagttgggatgtc 11485221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 35795883 - 35795805
Alignment:
Q  117 tttaataatatttattttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtctgag 196  Q
    |||||||||||| |||||| | ||| |||  |||| |||| ||| |||||||||||||||||||||||||||||| ||||    
T  35795883 tttaataatattgattttacg-ggtcggcgacagatgatgagggattctcaggggtgccaacctagttgggatgtttgag 35795805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 20632469 - 20632518
Alignment:
Q  142 tggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    ||||||||| |||||| ||| |||| |||||||||||||||||||||||||    
T  20632469 tggcagcaggggatggaggtgtctc-ggggtgccaacctagttgggatgtc 20632518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 21862602 - 21862639
Alignment:
Q  149 agaggatgggggtttctcaggggtgccaacctagttgg 186  Q
    |||||||||||||||||  |||||||||||||||||||    
T  21862602 agaggatgggggtttctgtggggtgccaacctagttgg 21862639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 15718819 - 15718874
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||||| ||||||||||||||| || ||| ||||||||||||| |||||||    
T  15718819 tgagtttggcagtagaggatgggggtttatc-gggatgccaacctagtttggatgtc 15718874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 20374196 - 20374141
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||||||| |||||||||||| ||  |||||| ||||||||||||||||||    
T  20374196 tgagtttggcagcataggatgggggtt-ctgcggggtggcaacctagttgggatgtc 20374141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 28581219 - 28581159
Alignment:
Q  129 tattttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggat 189  Q
    |||||||||||   ||| ||| |||||| ||||||||||| ||| ||||||||||||||||    
T  28581219 tattttatgagacaggcggcaaaggatgagggtttctcagaggttccaacctagttgggat 28581159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 40926535 - 40926460
Alignment:
Q  141 ttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtctgaggttctccctgatgcatgtcct 217  Q
    ||||| ||| ||||||| |||||| | |||||||||||||||||||||||||   | |||  |||||||||||||||    
T  40926535 ttggcggcataggatggaggtttccc-ggggtgccaacctagttgggatgtcgatgtttcctcctgatgcatgtcct 40926460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 6758 - 6799
Alignment:
Q  149 agaggatgggggtttctcaggggtgccaacctagttgggatg 190  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  6758 agaggatgggggtttctgtggggtgccaacctagttgggatg 6799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 42861 - 42902
Alignment:
Q  149 agaggatgggggtttctcaggggtgccaacctagttgggatg 190  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  42861 agaggatgggggtttctgtggggtgccaacctagttgggatg 42902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 16290860 - 16290910
Alignment:
Q  141 ttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    ||||||||| ||||||| |||||| | |||||||||||||||||||||||||    
T  16290860 ttggcagcataggatggaggtttccc-ggggtgccaacctagttgggatgtc 16290910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 14413342 - 14413391
Alignment:
Q  142 tggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  14413342 tggcagcagaggatggaggtgtctc-gaggtgccaacctagttgggatgtc 14413391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 43856112 - 43856172
Alignment:
Q  131 ttttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    ||||||||| ||||| ||| ||||||| |||| ||  |||||||||||||||||||||||||    
T  43856112 ttttatgagtttggcggcacaggatggaggtt-ctgcggggtgccaacctagttgggatgtc 43856172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 18695520 - 18695575
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||||| ||||||||||||||| || ||| ||||||||||||| |||||||    
T  18695520 tgagtttggcagtagaggatgggggtttatc-gggatgccaacctagtttggatgtc 18695575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 5369 - 5320
Alignment:
Q  142 tggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  5369 tggcagcagaggatggaggtgtctc-gaggtgccaacctagttgggatgtc 5320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 20740 - 20696
Alignment:
Q  147 gcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||    
T  20740 gcagaggatggaggtgtctc-ggggtgccaacctagttgggatgtc 20696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 19160487 - 19160524
Alignment:
Q  149 agaggatgggggtttctcaggggtgccaacctagttgg 186  Q
    |||||||||||||||||  |||||||||||||||||||    
T  19160487 agaggatgggggtttctgtggggtgccaacctagttgg 19160524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 20759886 - 20759923
Alignment:
Q  149 agaggatgggggtttctcaggggtgccaacctagttgg 186  Q
    |||||||||||||||||  |||||||||||||||||||    
T  20759886 agaggatgggggtttctgtggggtgccaacctagttgg 20759923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 26178065 - 26178106
Alignment:
Q  149 agaggatgggggtttctcaggggtgccaacctagttgggatg 190  Q
    ||||||||| |||||||  |||||||||||||||||||||||    
T  26178065 agaggatggaggtttctgtggggtgccaacctagttgggatg 26178106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 37375023 - 37375063
Alignment:
Q  151 aggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  37375023 aggatgggggttcctc-ggggtgccaacctagttgggatgtc 37375063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 1862406 - 1862351
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||    
T  1862406 tgagtttggcggcataggatggaggtt-ctccggggtgccaacctagttgggatgtc 1862351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 7315225 - 7315149
Alignment:
Q  117 tttaataatatttattttatgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtct 193  Q
    |||||||||||||||| |||| |   ||| ||| | ||||||||||||  || ||||||||||||||||| ||||||    
T  7315225 tttaataatatttattatatgtgacgggcggcacaagatgggggtttcatagaggtgccaacctagttggcatgtct 7315149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 12163394 - 12163449
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||||||||| ||||| ||||| |||||| | | |||||||||||||||||||||||    
T  12163394 tgaggttggcggcagacgatggaggtttccc-gaggtgccaacctagttgggatgtc 12163449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 22980600 - 22980560
Alignment:
Q  169 gggtgccaacctagttgggatgtctgaggttctccctgatg 209  Q
    ||||||||||||||||||||||| | || ||||||||||||    
T  22980600 gggtgccaacctagttgggatgtttcagtttctccctgatg 22980560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 38993176 - 38993121
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||| ||| |||||||||||| ||  |||||||||||||||||||||||||    
T  38993176 tgagattggcggcataggatgggggtt-ctgcggggtgccaacctagttgggatgtc 38993121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 67376 - 67431
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||||| ||||||||||||||| || ||| ||||||||||||| |||||||    
T  67376 tgagtttggcagtagaggatgggggtttatc-gggatgccaacctagtttggatgtc 67431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 173867 - 173922
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||||||| | ||||| ||| |||| |||||||||||||||||||||||||    
T  173867 tgagattggcagcataagatggaggtatctc-ggggtgccaacctagttgggatgtc 173922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 18332780 - 18332725
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||| ||| ||||||| |||| ||| |||||||||||||||||||||||||    
T  18332780 tgagtttggcggcataggatggaggtt-ctccggggtgccaacctagttgggatgtc 18332725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 21487915 - 21487860
Alignment:
Q  136 tgaggttggcagcagaggatgggggtttctcaggggtgccaacctagttgggatgtc 192  Q
    |||| ||||| ||| ||||||||||||  || |||||||||||||||||||||||||    
T  21487915 tgagtttggcggcataggatgggggttcttc-ggggtgccaacctagttgggatgtc 21487860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 41917092 - 41917131
Alignment:
Q  151 aggatgggggtttctcaggggtgccaacctagttgggatgt 191  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  41917092 aggatgggggtt-ctccggggtgccaacctagttgggatgt 41917131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University