View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13887_high_4 (Length: 322)
Name: NF13887_high_4
Description: NF13887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13887_high_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 49553245 - 49552937
Alignment:
| Q |
9 |
taaccttcacataagcccatctctcattgttctggaccccctctatctcttcatcgatgttttcatgcacaatctagaatgtgttctgcttgggaaaata |
108 |
Q |
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| T |
49553245 |
taaccttcacataaccccatctctcattgttctggaccccctctatctcttcatcgaagttttcatgcacaatctagaatgtgttctgcttgggaagata |
49553146 |
T |
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| Q |
109 |
taatgtcctgtttaaaagagcacagtcgtagtcaatgcttgagtttcatgtatttacaatga---nnnnnnnnncgcgagtatctaaatttatataaatg |
205 |
Q |
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| T |
49553145 |
taatgtcctatttaaa--agcacggtcgtagtcaatgcttgagtttcatgtatttacaatgattttttttttctcgcaagtatctaa------ataaatg |
49553054 |
T |
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| Q |
206 |
aatggaaattccaaaggcacgtggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatgtaagac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49553053 |
aatggaaattccaaaggcacgtggaagacaagaaaacctactccattatcaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagac |
49552954 |
T |
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| Q |
306 |
atggtaaaaacataaca |
322 |
Q |
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| T |
49552953 |
atggtaaaaacataaca |
49552937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 49537730 - 49537616
Alignment:
| Q |
208 |
tggaaattccaaaggcacgtggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatgtaagacat |
307 |
Q |
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| T |
49537730 |
tggaaattccaaaagcacatggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagacat |
49537631 |
T |
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| Q |
308 |
ggtaaaaacataaca |
322 |
Q |
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| T |
49537630 |
ggtaaaaacaaaaca |
49537616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 49538578 - 49538498
Alignment:
| Q |
9 |
taaccttcacataagcccatctctcattgttctggaccccctctatctcttcatcgatgttttcatgcaca-atctagaat |
88 |
Q |
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||||||||||||||||||||||||||||| |||| || ||||||||||||||||| | ||||||||| ||| ||||||||| |
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| T |
49538578 |
taaccttcacataagcccatctctcattgctctgtactccctctatctcttcatcaaagttttcatggacagatctagaat |
49538498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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