View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13887_low_3 (Length: 328)
Name: NF13887_low_3
Description: NF13887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13887_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 22039504 - 22039805
Alignment:
| Q |
20 |
atataaaggcaagagcaatgctagcttagcataagacaaattaaattaagatggcagatcaagtgaagctacatggattttggtacagtccttttacttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22039504 |
atataaaggcaagagcaatgctagcttagcataagacaaattaa-ttaagatggcagatcaagtgaagatacatggattttggtacagtccttttacttt |
22039602 |
T |
|
| Q |
120 |
gagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22039603 |
aagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaggaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtg |
22039702 |
T |
|
| Q |
220 |
cacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgc |
319 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22039703 |
cacaagaaaactccagtgttggttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgc |
22039802 |
T |
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| Q |
320 |
ttc |
322 |
Q |
| |
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||| |
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| T |
22039803 |
ttc |
22039805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 82 - 322
Target Start/End: Complemental strand, 40326177 - 40325937
Alignment:
| Q |
82 |
gtgaagctacatggattttggtacagtccttttactttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtt |
181 |
Q |
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||||| ||||| ||||||||||| ||||||| ||||||||||||||||| |||| | || ||||| ||||||||||||||||||||||| |||||||||| |
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| T |
40326177 |
gtgaaactacacggattttggtatagtccttatactttgagggtagtatggaccttgaatctaaagggtataccatatgagaacatagaggaagatcgtt |
40326078 |
T |
|
| Q |
182 |
tcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgt |
281 |
Q |
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|||| || ||||||| ||||||||||| || ||| | |||||||| ||||||||||| ||||||||||||||||| |||| ||||| ||||||||||| |
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| T |
40326077 |
tcaataaaagtcctctgcttcttcaatataacccaatacacaagaagactccagtgttggttcatgatggaaaacccatatgcgagtcaatgatcattgt |
40325978 |
T |
|
| Q |
282 |
tgaatacattgatgagatatggccacaataccctttgcttc |
322 |
Q |
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|||||||||||||||||||||||||||| || | ||||||| |
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| T |
40325977 |
tgaatacattgatgagatatggccacaaaacacattgcttc |
40325937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 40338523 - 40338297
Alignment:
| Q |
82 |
gtgaagctacatggattttggtacagtccttttactttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtt |
181 |
Q |
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||||| ||||||||||||||||| |||||||||||||| ||||| |||| |||||| || | |||||||||||||||||||||||||| |||||||||| |
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| T |
40338523 |
gtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccctaaatttgaaaggtataccatatgagaacatagaggaagatcgtt |
40338424 |
T |
|
| Q |
182 |
tcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgt |
281 |
Q |
| |
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|||| ||||| ||||||||||||| || || || || | |||||| ||||||||| | |||| |||| |||||| |||||||||||||||||||||| |
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| T |
40338423 |
tcaataagagctctcaacttcttcactataaccccgtacgcaagaatactccagtgctgattcacgatgaaaaaccaatatgtgagtctatgatcattgt |
40338324 |
T |
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| Q |
282 |
tgaatacattgatgagatatggccaca |
308 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
40338323 |
tgaatacattgatgagatatggccaca |
40338297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 82 - 308
Target Start/End: Complemental strand, 40343707 - 40343481
Alignment:
| Q |
82 |
gtgaagctacatggattttggtacagtccttttactttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtt |
181 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||| |||| |||| | || | || ||||||||||||||||||||||| ||| |||| | |
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| T |
40343707 |
gtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccttaaatttgaagggtataccatatgagaacatagaggaatatcgct |
40343608 |
T |
|
| Q |
182 |
tcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgt |
281 |
Q |
| |
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|||| || ||||||| ||||||||||| || ||| | ||||||| ||||||||| || |||||||||||||||| |||||||||| ||||||||||| |
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| T |
40343607 |
tcaataaaagtcctctgcttcttcaatataacccaatatacaagaagactccagtgctaattcatgatggaaaaccaatatgtgagtccatgatcattgt |
40343508 |
T |
|
| Q |
282 |
tgaatacattgatgagatatggccaca |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
40343507 |
tgaatacattgatgagatatggccaca |
40343481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 309
Target Start/End: Complemental strand, 40331388 - 40331167
Alignment:
| Q |
88 |
ctacatggattttggtacagtccttttactttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaaca |
187 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||| ||||| |||| |||||| || || || |||||||| ||||| | ||||||||||||| ||||| | |
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| T |
40331388 |
ctacatggatcttggtatagtcctttcactttaagggtggtatggaccctaaatctgaagggtataccgtatgatagtatagaagaagatcacttcaata |
40331289 |
T |
|
| Q |
188 |
agagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaata |
287 |
Q |
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|| |||||||||||||||||| || ||| | ||||| |||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
40331288 |
ggactcctcaacttcttcaatataacccaatacacaaaaaaactccagtgctggttcatgatggaaaacccatatgtgagtccatgattattgttgaata |
40331189 |
T |
|
| Q |
288 |
cattgatgagatatggccacaa |
309 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
40331188 |
cattgatgagatatggccacaa |
40331167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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