View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13888_high_12 (Length: 202)
Name: NF13888_high_12
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13888_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 9370248 - 9370383
Alignment:
| Q |
16 |
tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt |
115 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9370248 |
tgagatgactgggttgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt |
9370347 |
T |
|
| Q |
116 |
ggcttgacaaggacgagagtgcgtttggagaggtaa |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9370348 |
ggcttgacaaggacgagagtgcgtttggagaggtaa |
9370383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 9348594 - 9348732
Alignment:
| Q |
16 |
tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
9348594 |
tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaattggggtttttccatgttgtggt |
9348693 |
T |
|
| Q |
116 |
ggcttgacaaggacgagagtgcgtttggagaggtaatag |
154 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9348694 |
ggcctgacaaggacgagagtgcgtttggagaggtaatag |
9348732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 9341314 - 9341396
Alignment:
| Q |
19 |
gatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
101 |
Q |
| |
|
||||| ||||| |||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
9341314 |
gatgagtgggtgaaagagtttggttttgccatgtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggttt |
9341396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 9407962 - 9408006
Alignment:
| Q |
41 |
gtttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
85 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9407962 |
gttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9408006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 9426170 - 9426213
Alignment:
| Q |
42 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
85 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9426170 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9426213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 9441300 - 9441257
Alignment:
| Q |
42 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
85 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9441300 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9441257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
| Q |
42 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
85 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
9417167 |
ttttgccatgtgagttttgggtaactctgatcaaccaaggacga |
9417210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 9353538 - 9353587
Alignment:
| Q |
52 |
tgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
101 |
Q |
| |
|
||||||||| |||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
9353538 |
tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggttt |
9353587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 250861 - 250825
Alignment:
| Q |
52 |
tgagttttgtgtaactctaatcaaccaaggacgacga |
88 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
250861 |
tgagttttgtgtaattctaaacaaccaaggacgacga |
250825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University