View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13888_high_3 (Length: 408)
Name: NF13888_high_3
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13888_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2024080 - 2024303
Alignment:
| Q |
1 |
tttcaagaaaaattgcagcacaagcctgcaaaattatgcacagcagcgaacaaaaa-caacacaggagcaatgtataaaagagtgtaaagcataggaatc |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||| |
|
|
| T |
2024080 |
tttcaagaaaaattgcagcacaaacctgccaaattatgcacagcagcgaacaaaaaacaacatatgagcgatgtataaaagagtgtaaagcataggaatc |
2024179 |
T |
|
| Q |
100 |
ctcaaaggtatgaattcaaaataaaacaatgtatatgtaactgcaaacatatccatgctttcctcataaaacatgttattttgatccaacactaacctat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
2024180 |
ctcaaaggtatgaattcaaaataaaacaatgtatatgtaactgcaaacatatccatgctttcctcataaaacatgttattttgttccaacaccaacctat |
2024279 |
T |
|
| Q |
200 |
ccaaaaaataacaaaaagagttaa |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2024280 |
ccaaaaaataacaaaaagagttaa |
2024303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 220 - 390
Target Start/End: Original strand, 2024432 - 2024602
Alignment:
| Q |
220 |
ttaaaatgctacattatgagattgaccataaaaaactaataacagaaatgagataagcatgaaagagctaccttttcatcgagcaggagcatgtgcagac |
319 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2024432 |
ttaaaatgctacattatgagattgaccgtaaaaaaataataacagaaatgagataagcatgaaagagctaccttttcatcgagcaggagcatgtgcagac |
2024531 |
T |
|
| Q |
320 |
ttccctcctcggctggattcgtatggtcaggaacactccatagacgaattactttagccatcaatgccaga |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||||| |
|
|
| T |
2024532 |
ttccctcctcggctggattcgtatggtcaggaacactccattggcgaattactctagccgtcaatgccaga |
2024602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University