View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13888_high_5 (Length: 363)
Name: NF13888_high_5
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13888_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 46843138 - 46843499
Alignment:
| Q |
1 |
agaaaagcggcaacaccagaagcaagtccaattttagcttcaggtatattaagctcttcaactaaagaagcaattgatttagcacactcaacagaacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46843138 |
agaaaagcggcaacaccagaagcaagtccaattttagcttcaggtatattaagctcttcaactaaagaagcaattgatttagcacactcaacagaacatg |
46843237 |
T |
|
| Q |
101 |
aattaggagttgaagataacaaagaaacagattcaggaaaagcttctcttattctacttataggccattcgaattccaatgccgtatcctttaacaaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46843238 |
aattaggagttgaagataacaaagaaacagattcaggaaaagcttctcttattctacttataggccattcgaattccaatgccgtatcctttaacaaaag |
46843337 |
T |
|
| Q |
201 |
tctcaacgattcttcattctctaaaaagcacaaaaatccaaattaattaaatcgtaatgacaaaagagattagagggaaaaggattgattgagtgaggga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46843338 |
tctcaacgattcttcattctctaaaaagcac-aaaatccaaattaattaaatcgtaatgacaaaagagattagagggaaaaggattgattgagtgaggga |
46843436 |
T |
|
| Q |
301 |
gagagtaccagaagaaggagtggaaaagcggagagaaacgtaggtgtataagtcaatagaaga |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46843437 |
gagagtaccagaagaaggagtggaaaagcggagagaaacgtaggtgtataagtcaatagaaga |
46843499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 11349275 - 11349407
Alignment:
| Q |
1 |
agaaaagcggcaacaccagaagcaagtccaattttagcttcaggtatattaagctcttcaactaaagaagcaattgatttagcacactcaacagaacatg |
100 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
11349275 |
agaaaagcggcaacaccaaatgcaagttcaattttagcctctggtatattaagctcttcaactaaagccgcaattgatttagcacactcaatagaacatg |
11349374 |
T |
|
| Q |
101 |
aattaggagttgaagataacaaagaaacagatt |
133 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||| |
|
|
| T |
11349375 |
aactaggagttgaagataaaaaagaaacagatt |
11349407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University