View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13888_high_8 (Length: 304)

Name: NF13888_high_8
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13888_high_8
NF13888_high_8
[»] chr7 (22 HSPs)
chr7 (9-286)||(44844909-44845186)
chr7 (11-78)||(22973432-22973499)
chr7 (11-78)||(42908023-42908090)
chr7 (17-78)||(18684024-18684085)
chr7 (17-78)||(27063384-27063445)
chr7 (9-82)||(38139770-38139843)
chr7 (11-79)||(12980421-12980489)
chr7 (11-82)||(7780052-7780123)
chr7 (31-78)||(43218347-43218394)
chr7 (36-82)||(10072535-10072581)
chr7 (36-82)||(38152956-38153002)
chr7 (12-77)||(10990844-10990909)
chr7 (29-78)||(31426070-31426119)
chr7 (17-81)||(3226925-3226989)
chr7 (40-82)||(17851925-17851967)
chr7 (40-82)||(35074543-35074585)
chr7 (36-82)||(39455993-39456039)
chr7 (38-79)||(2630555-2630596)
chr7 (17-78)||(3157133-3157194)
chr7 (17-78)||(29014934-29014995)
chr7 (17-82)||(45885743-45885808)
chr7 (18-82)||(16866220-16866284)
[»] chr5 (18 HSPs)
chr5 (20-78)||(23044974-23045032)
chr5 (29-78)||(43523805-43523854)
chr5 (11-78)||(2681255-2681322)
chr5 (36-81)||(6155900-6155945)
chr5 (17-82)||(10127119-10127184)
chr5 (29-78)||(18116500-18116549)
chr5 (17-78)||(28569004-28569065)
chr5 (30-78)||(12915531-12915579)
chr5 (12-78)||(10834536-10834601)
chr5 (36-78)||(24207748-24207790)
chr5 (36-82)||(38972986-38973032)
chr5 (40-82)||(40517874-40517916)
chr5 (17-82)||(4583164-4583229)
chr5 (17-82)||(4920871-4920936)
chr5 (17-57)||(12712561-12712601)
chr5 (17-57)||(12773825-12773865)
chr5 (38-82)||(20973475-20973519)
chr5 (18-82)||(42987458-42987522)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-78)||(211409-211470)
[»] chr4 (16 HSPs)
chr4 (17-78)||(14605908-14605969)
chr4 (21-78)||(47103793-47103850)
chr4 (19-60)||(11173026-11173067)
chr4 (11-78)||(7334180-7334246)
chr4 (36-78)||(1724252-1724294)
chr4 (36-82)||(10302154-10302200)
chr4 (40-82)||(11122848-11122890)
chr4 (17-59)||(29527863-29527905)
chr4 (22-60)||(31782669-31782707)
chr4 (36-82)||(37349182-37349228)
chr4 (29-79)||(39375341-39375391)
chr4 (20-78)||(41914979-41915037)
chr4 (36-78)||(42299858-42299900)
chr4 (40-82)||(44317609-44317651)
chr4 (36-65)||(1724306-1724335)
chr4 (17-82)||(11028124-11028189)
[»] chr2 (13 HSPs)
chr2 (17-82)||(37106738-37106803)
chr2 (11-82)||(44746087-44746158)
chr2 (36-82)||(12341665-12341711)
chr2 (17-78)||(4427970-4428031)
chr2 (17-82)||(7314626-7314691)
chr2 (17-78)||(43371599-43371660)
chr2 (37-80)||(10212472-10212515)
chr2 (40-82)||(30847015-30847057)
chr2 (37-82)||(19104815-19104860)
chr2 (17-82)||(37472737-37472802)
chr2 (17-61)||(15546790-15546834)
chr2 (17-69)||(24051615-24051667)
chr2 (20-60)||(35409167-35409207)
[»] chr6 (17 HSPs)
chr6 (20-78)||(9458906-9458964)
chr6 (17-82)||(5863361-5863426)
chr6 (17-82)||(27738817-27738882)
chr6 (17-78)||(28079678-28079739)
chr6 (17-82)||(30986298-30986363)
chr6 (20-78)||(17546884-17546942)
chr6 (17-82)||(10188058-10188123)
chr6 (17-74)||(20610968-20611025)
chr6 (29-76)||(18908950-18908997)
chr6 (17-60)||(29199885-29199928)
chr6 (19-81)||(10142497-10142559)
chr6 (36-82)||(12678072-12678118)
chr6 (18-72)||(20349110-20349164)
chr6 (17-82)||(2367371-2367436)
chr6 (17-82)||(32853889-32853954)
chr6 (17-77)||(21875632-21875692)
chr6 (38-78)||(30624481-30624521)
[»] chr1 (21 HSPs)
chr1 (17-79)||(5181085-5181147)
chr1 (17-78)||(12718753-12718815)
chr1 (17-78)||(16237286-16237347)
chr1 (17-82)||(16408988-16409053)
chr1 (17-82)||(36187198-36187263)
chr1 (11-82)||(33293509-33293580)
chr1 (39-82)||(40087442-40087485)
chr1 (11-82)||(49250751-49250822)
chr1 (40-82)||(24236739-24236781)
chr1 (24-78)||(35069871-35069925)
chr1 (17-79)||(35936810-35936872)
chr1 (36-82)||(39616357-39616403)
chr1 (25-82)||(13020647-13020704)
chr1 (17-78)||(19003648-19003709)
chr1 (17-78)||(23058512-23058573)
chr1 (36-81)||(29871264-29871309)
chr1 (17-82)||(44615453-44615518)
chr1 (17-82)||(44793051-44793116)
chr1 (36-80)||(17135012-17135056)
chr1 (40-80)||(23490751-23490791)
chr1 (11-79)||(23968619-23968687)
[»] scaffold0184 (1 HSPs)
scaffold0184 (17-78)||(3014-3075)
[»] chr8 (13 HSPs)
chr8 (17-82)||(20399637-20399702)
chr8 (38-82)||(6388494-6388538)
chr8 (18-82)||(27932459-27932523)
chr8 (19-78)||(15068570-15068629)
chr8 (17-78)||(15173862-15173923)
chr8 (38-81)||(1012684-1012727)
chr8 (36-79)||(17220776-17220819)
chr8 (6-69)||(32392377-32392440)
chr8 (11-82)||(45236104-45236175)
chr8 (40-82)||(32303129-32303171)
chr8 (17-82)||(5858630-5858695)
chr8 (38-82)||(29108800-29108844)
chr8 (38-82)||(37960940-37960984)
[»] chr3 (15 HSPs)
chr3 (17-82)||(48390795-48390860)
chr3 (36-82)||(4016022-4016068)
chr3 (36-82)||(4557283-4557329)
chr3 (36-82)||(6738383-6738429)
chr3 (36-82)||(23154043-23154089)
chr3 (36-82)||(30616259-30616305)
chr3 (17-78)||(35687473-35687534)
chr3 (17-82)||(49580109-49580174)
chr3 (11-78)||(2490344-2490411)
chr3 (36-82)||(20087061-20087107)
chr3 (36-82)||(34026018-34026064)
chr3 (40-82)||(44252815-44252857)
chr3 (25-82)||(23580880-23580937)
chr3 (17-82)||(39655251-39655316)
chr3 (17-82)||(44953413-44953478)
[»] scaffold0036 (1 HSPs)
scaffold0036 (17-69)||(33438-33490)
[»] scaffold0008 (2 HSPs)
scaffold0008 (17-78)||(67794-67855)
scaffold0008 (17-78)||(75637-75698)
[»] scaffold0013 (1 HSPs)
scaffold0013 (11-63)||(128118-128170)
[»] scaffold0002 (1 HSPs)
scaffold0002 (38-78)||(449768-449808)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 44845186 - 44844909
Alignment:
Q  9 ctcattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacggnnnnnnnntccgttaaatcggaattc 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||| |||    
T  44845186 ctcattaaccgtcccgtacccgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacggaaaaaaaatccgtcaaatcggagttc 44845087  T
Q  109 gtttgaacgggtatccataaacatgagttttgttgccatgtctacatgtgagggagttgagctagcgcgatattgtgaagttcccttcgttcgtgccctt 208  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44845086 gtttgaacgggtattcatgaacatgagttttgttgccatgtctacaagtgagggagttgaggtagcgcgatattgtgaagttcccttcgttcgtgccctt 44844987  T
Q  209 ctgtttggcccaactgtttgttatggagcgatagtctctgcagtatggtttgcagatattgttgtaatgtaccattat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44844986 ctgtttggcccaactgtttgttatggagcgatagtctctgcagtatggtttggagatattgttgtaatgtaccattat 44844909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 22973432 - 22973499
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| ||||||||||| |||||| |||||||| |||||||||||||||||||| |||| ||||||||    
T  22973432 cattacccgtcccgtacccgtattttgaaatcgtggaaaacccaaacccatacccaaacccagtcaaa 22973499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 42908090 - 42908023
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||| |||||| |||| || |||||    
T  42908090 cattacccgtcccgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacccaatcaaa 42908023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 18684024 - 18684085
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||| ||||  |||||||    
T  18684024 ccgtcccgtacccgtattttgaaatcggggaaaacccgaacccatacccaaacctagtcaaa 18684085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 27063384 - 27063445
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||| |||||||| ||||||||||||||| | ||||||||| |||| ||||||||    
T  27063384 ccgtcccgtacccgtattattaaatcggggaaaaccgagacccatacccaaacccagtcaaa 27063445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 38139843 - 38139770
Alignment:
Q  9 ctcattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||||||| ||||||| || |||||| |||||||||||| ||||||| | |||| ||||||||||||    
T  38139843 ctcattacccgtcccatactcgtgttttgaaattggggaaaacccatacccatatccaaacccagtcaaaacgg 38139770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 12980421 - 12980489
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaa 79  Q
    ||||| ||||||| ||| ||| || ||||||||||||||||| ||||||||||| |||| |||||||||    
T  12980421 cattacccgtcccatacccgtgttttgaaatcggggaaaaccaaaacccatacccaaacccagtcaaaa 12980489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7780052 - 7780123
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||| ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||| ||||||||||||    
T  7780052 cattatccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacgg 7780123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 43218347 - 43218394
Alignment:
Q  31 tattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||||    
T  43218347 tattatgaaattggggaaaacccaaacccatacccaaacccagtcaaa 43218394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 10072535 - 10072581
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  10072535 tgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgg 10072581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 38152956 - 38153002
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  38152956 tgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgg 38153002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 10990909 - 10990844
Alignment:
Q  12 attaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaa 77  Q
    |||| ||||||||||| |||||| ||||||||||||||| || |||||||||  ||||||| ||||    
T  10990909 attacccgtcccgtacccgtattttgaaatcggggaaaaacccaacccatactcaaactcattcaa 10990844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 31426070 - 31426119
Alignment:
Q  29 cgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||| | ||||||||||||||||||||| |||||||||| ||||||||    
T  31426070 cgtatttttaaatcggggaaaacccaaaccaataccaaaacccagtcaaa 31426119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 3226989 - 3226925
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacg 81  Q
    ||||||| ||| ||| || ||||||||||||||||||| ||||||||  ||||||||| ||||||    
T  3226989 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatactcaaactcagttaaaacg 3226925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 17851925 - 17851967
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  17851925 atcggggaaaacccatacccatacccaaacccagtcaaaacgg 17851967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 35074543 - 35074585
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  35074543 atcggggaaaacccatacccatacccaaacccagtcaaaacgg 35074585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 39456039 - 39455993
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  39456039 tgaaatcggggaaaacccatatccatacccaaacccagtcaaaacgg 39455993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 2630596 - 2630555
Alignment:
Q  38 aaatcggggaaaacccaaacccataccaaaactcagtcaaaa 79  Q
    ||||||||||||||||||||||||||| |||| |||| ||||    
T  2630596 aaatcggggaaaacccaaacccatacccaaacccagtaaaaa 2630555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 3157133 - 3157194
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||| ||| | |||| ||||||||||||||||| ||||||||||| ||||  |||||||    
T  3157133 ccgtcccatacccatattttgaaatcggggaaaacctaaacccatacccaaaccaagtcaaa 3157194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 29014995 - 29014934
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||| |||||| |||||||||| ||||| ||||| |||||| |||| || |||||    
T  29014995 ccgtcccgtacccgtattttgaaatcgggaaaaactcaaactcatacctaaacccaatcaaa 29014934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45885808 - 45885743
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| |||||||||||| || ||||||||| |||| ||||||||||||    
T  45885808 ccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacccagtcaaaacgg 45885743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 16866220 - 16866284
Alignment:
Q  18 cgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||| ||| ||| || ||| ||||||||||||||| ||||||| | |||| ||||||||||||    
T  16866220 cgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtcaaaacgg 16866284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 23045032 - 23044974
Alignment:
Q  20 tcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  23045032 tcccgtacccgtattttgaaatcggggaaaacctaaacccatacccaaactcagtcaaa 23044974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 43523805 - 43523854
Alignment:
Q  29 cgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||| |||||||||||||||||||||| |||||| |||||||||||||    
T  43523805 cgtattttgaaatcggggaaaacccaaactcatacccaaactcagtcaaa 43523854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 2681255 - 2681322
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| || ||||||||  ||||| |||||||||||||||||||||| ||| || |||||||||||||    
T  2681255 cattacccatcccgtacctgtattttgaaatcggggaaaacccaaactcatgcccaaactcagtcaaa 2681322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 6155945 - 6155900
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacg 81  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||    
T  6155945 tgaaatcggggaaaacccaaacacatacccaaacccagtcaaaacg 6155900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 10127119 - 10127184
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||| ||||||||||||    
T  10127119 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacgg 10127184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 18116549 - 18116500
Alignment:
Q  29 cgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||| ||||||||| |||||||||||| |||||| |||||||||||||    
T  18116549 cgtattttgaaatcggagaaaacccaaactcatacccaaactcagtcaaa 18116500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 28569065 - 28569004
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||| || ||| ||||||||||||||| |||||| |||||| |||| ||||||||    
T  28569065 ccgtcccgtacccgcattttgaaatcggggaaaatccaaactcatacccaaacccagtcaaa 28569004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 12915531 - 12915579
Alignment:
Q  30 gtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||||||||||||| |||||||||||||||||| || | ||||||||    
T  12915531 gtattatgaaatcgggaaaaacccaaacccatacccaaccccagtcaaa 12915579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 10834536 - 10834601
Alignment:
Q  12 attaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||| ||||||||||| | ||||||||||| ||| |||| ||||||||||||||||||  |||||||    
T  10834536 attacccgtcccgtaccc-tattatgaaattgggaaaaatccaaacccataccaaaacctagtcaaa 10834601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 24207748 - 24207790
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||||||||||||| |||||||||||| ||||||| |||||    
T  24207748 tgaaatcggggaaaactcaaacccatacccaaactcaatcaaa 24207790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 38972986 - 38973032
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||||||| ||||||||||| |||||| |||| ||||||||||||    
T  38972986 tgaaatcgggaaaaacccaaactcatacctaaacccagtcaaaacgg 38973032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 40517874 - 40517916
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  40517874 atcggggaaaacccatacccatacccaaacccagtcaaaacgg 40517916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 4583164 - 4583229
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||||||||||||||||||| ||||||| | |||| || |||||||||    
T  4583164 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatatccaaacccaatcaaaacgg 4583229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 4920871 - 4920936
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||| | |||| ||||||||||||    
T  4920871 ccgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtcaaaacgg 4920936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 12712601 - 12712561
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaac 57  Q
    ||||||||||| |||||| ||||||||| ||||||||||||    
T  12712601 ccgtcccgtacccgtattttgaaatcggagaaaacccaaac 12712561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 12773865 - 12773825
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaac 57  Q
    ||||||||||| |||||| ||||||||| ||||||||||||    
T  12773865 ccgtcccgtacccgtattttgaaatcggagaaaacccaaac 12773825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 20973519 - 20973475
Alignment:
Q  38 aaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||| ||||||| | |||| ||||||||||||    
T  20973519 aaatcggggaaaacccatacccataaccaaacccagtcaaaacgg 20973475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 42987522 - 42987458
Alignment:
Q  18 cgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||| ||| ||| || ||| ||||||||||| ||| |||| |||| |||||||||||||||||    
T  42987522 cgtcccatacccgtgttttgagatcggggaaaatccatacccgtacccaaactcagtcaaaacgg 42987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 211409 - 211470
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| ||||| |||||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  211409 ccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtcaaa 211470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 14605969 - 14605908
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| ||||| |||||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  14605969 ccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtcaaa 14605908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 47103793 - 47103850
Alignment:
Q  21 cccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||||    
T  47103793 cccgtacccgtattttgaaattggggaaaacccaaacccatacaaaaacccagtcaaa 47103850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 11173026 - 11173067
Alignment:
Q  19 gtcccgtactcgtattatgaaatcggggaaaacccaaaccca 60  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  11173026 gtcccgtacccgtattttgaaatcggggaaaacccaaaccca 11173067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 7334246 - 7334180
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| ||||||||||| ||| || ||||||||||||||| ||||| ||||||| |||| ||||||||    
T  7334246 cattatccgtcccgtac-cgtgttttgaaatcggggaaaatccaaatccatacccaaacccagtcaaa 7334180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 1724294 - 1724252
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||||||| |||||||||||||||||| |||| ||||||||    
T  1724294 tgaaatcgggaaaaacccaaacccatacccaaacccagtcaaa 1724252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 10302154 - 10302200
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||| ||||||||||| |||| || |||||||||    
T  10302154 tgaaatcggggaaaacctaaacccatacccaaacccaatcaaaacgg 10302200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 11122890 - 11122848
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||    
T  11122890 atcggagaaaacccatacccatacccaaactcagtcaaaacgg 11122848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 29527863 - 29527905
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaaccc 59  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||    
T  29527863 ccgtcacgtacccgtattttgaaatcggggaaaacccaaaccc 29527905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 31782669 - 31782707
Alignment:
Q  22 ccgtactcgtattatgaaatcggggaaaacccaaaccca 60  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  31782669 ccgtacccgtattttgaaatcggggaaaacccaaaccca 31782707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 37349182 - 37349228
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||||||||||||| ||||| |||||| |||| ||||||||||||    
T  37349182 tgaaatcggggaaaactcaaactcatacccaaacccagtcaaaacgg 37349228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 39375341 - 39375391
Alignment:
Q  29 cgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaa 79  Q
    |||||| ||||||||||||||| |||||| |||| | ||||||||||||||    
T  39375341 cgtattttgaaatcggggaaaagccaaactcatatccaaactcagtcaaaa 39375391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 41915037 - 41914979
Alignment:
Q  20 tcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||||| | |||| |||||||||||||||||||||| ||||||  ||| ||||||||    
T  41915037 tcccgtacccatattttgaaatcggggaaaacccaaactcatacccgaacccagtcaaa 41914979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 42299858 - 42299900
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||    
T  42299858 tgaaatcggggaaaatccatacccatacctaaactcagtcaaa 42299900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 44317609 - 44317651
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  44317609 atcggggaaaacccatacccatacccaaacccagtcaaaacgg 44317651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 1724335 - 1724306
Alignment:
Q  36 tgaaatcggggaaaacccaaacccatacca 65  Q
    ||||||||||||||||||||||||||||||    
T  1724335 tgaaatcggggaaaacccaaacccatacca 1724306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 11028124 - 11028189
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||  ||||||||||||    
T  11028124 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaatccagtcaaaacgg 11028189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 37106738 - 37106803
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  37106738 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaactcagtcaaaacgg 37106803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 44746158 - 44746087
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||| ||||||| || |||| || ||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  44746158 cattacccgtcccatattcgtgttttgaaatcggggaaaacccaaatccatacccaaactcaatcaaaacgg 44746087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 12341665 - 12341711
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  12341665 tgaaatcggggaaaacccatacccatacccaaactcagtcaaaacgg 12341711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 4427970 - 4428031
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||  ||| |||||||||    
T  4427970 ccgtcccttacccgtattatgaagtcggggaaaacccaaacccatactcaaattcagtcaaa 4428031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 7314691 - 7314626
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||| | |||| ||||||||||||    
T  7314691 ccgtcccatactcgtattttaaaatcggggaaaacccatacccatatccaaacccagtcaaaacgg 7314626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 43371599 - 43371660
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||| |||||| | |||||||||||||| |||||| ||||| |||||||||||||    
T  43371599 ccgtcccgtacccgtattttaaaatcggggaaaactcaaaccaatacccaaactcagtcaaa 43371660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 10212472 - 10212515
Alignment:
Q  37 gaaatcggggaaaacccaaacccataccaaaactcagtcaaaac 80  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||    
T  10212472 gaaatcggggaaaacccaaactcataccaaaacccagtcaaaac 10212515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 30847015 - 30847057
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  30847015 atcggggaaaacccatacccatacccaaacccagtcaaaacgg 30847057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 19104860 - 19104815
Alignment:
Q  37 gaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||||| |||||| |||| || |||||||||    
T  19104860 gaaatcggggaaaacccaaactcatacccaaacccaatcaaaacgg 19104815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 37472802 - 37472737
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||||||||||||||| ||| || |||||| |||| ||||||||||||    
T  37472802 ccgtcccatacccgtgttttgaaatcggggaaaatccatactcatacccaaacccagtcaaaacgg 37472737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 15546790 - 15546834
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccat 61  Q
    ||||||| ||| ||| || ||||||||||||||||||||||||||    
T  15546790 ccgtcccatacccgtgttttgaaatcggggaaaacccaaacccat 15546834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 24051667 - 24051615
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaac 69  Q
    ||||||| |||||||||| | ||||||| |||| |||||||||||||| ||||    
T  24051667 ccgtcccatactcgtattttaaaatcggagaaatcccaaacccatacccaaac 24051615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 35409207 - 35409167
Alignment:
Q  20 tcccgtactcgtattatgaaatcggggaaaacccaaaccca 60  Q
    ||||||||| || || |||||||||||||||||||||||||    
T  35409207 tcccgtactagtgttttgaaatcggggaaaacccaaaccca 35409167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 9458906 - 9458964
Alignment:
Q  20 tcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||| |||| ||||||||    
T  9458906 tcccgtacccgtattattaaatcggggaaaacccagacccatacccaaacccagtcaaa 9458964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 5863426 - 5863361
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  5863426 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgg 5863361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 27738817 - 27738882
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  27738817 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacctaaacccagtcaaaacgg 27738882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 28079739 - 28079678
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||| | | || ||||||||||||||||||||||||||||| |||||||| ||||    
T  28079739 ccgtcccgtacccatgttttgaaatcggggaaaacccaaacccatacccaaactcagccaaa 28079678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30986298 - 30986363
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||||||||||||||||    
T  30986298 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaactcagtcaaaacgg 30986363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 17546942 - 17546884
Alignment:
Q  20 tcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||||  ||||||||||||||| ||||| |||||||||||||| |||| ||||||||    
T  17546942 tcccgtatccgtattatgaaatcgaggaaaccccaaacccatacccaaacccagtcaaa 17546884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 10188123 - 10188058
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||| ||||||||||||    
T  10188123 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacgg 10188058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 20611025 - 20610968
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagt 74  Q
    ||||||| ||| |||||| |||||||||||||| |||||||||||||| |||| ||||    
T  20611025 ccgtcccctacccgtattttgaaatcggggaaaccccaaacccatacctaaacccagt 20610968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 18908950 - 18908997
Alignment:
Q  29 cgtattatgaaatcggggaaaacccaaacccataccaaaactcagtca 76  Q
    |||||| |||||||||||||||||||||| |||||  |||||||||||    
T  18908950 cgtattttgaaatcggggaaaacccaaactcatactcaaactcagtca 18908997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 29199928 - 29199885
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaaccca 60  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||    
T  29199928 ccgtcccgtacccgtattttgaaatcggggaaaatccaaaccca 29199885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 10142559 - 10142497
Alignment:
Q  19 gtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacg 81  Q
    ||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||| |||||||||||    
T  10142559 gtcccatacccgttttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacg 10142497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 12678118 - 12678072
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||||||||||||| ||||| |||||| |||| ||||||||||||    
T  12678118 tgaaatcggggaaaacgcaaactcatacccaaacccagtcaaaacgg 12678072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 20349110 - 20349164
Alignment:
Q  18 cgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactca 72  Q
    |||||| ||| ||| || ||||||||||||||| |||||| ||||||||||||||    
T  20349110 cgtcccatacccgtgttttgaaatcggggaaaatccaaactcataccaaaactca 20349164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 2367371 - 2367436
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| ||||  |||||||||||    
T  2367371 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacctagtcaaaacgg 2367436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 32853889 - 32853954
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||| | |||| ||||||||||||    
T  32853889 ccgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtcaaaacgg 32853954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 21875692 - 21875632
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaa 77  Q
    ||||||||||| ||| |||| |||| || |||||| |||||||| |||||||| |||||||    
T  21875692 ccgtcccgtacccgtgttataaaattggagaaaactcaaacccaaaccaaaacccagtcaa 21875632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 30624481 - 30624521
Alignment:
Q  38 aaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||||||||||||||| ||| |||| ||||||||    
T  30624481 aaatcggggaaaacccaaacccaaacccaaacccagtcaaa 30624521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 5181085 - 5181147
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaa 79  Q
    ||||||| ||| |||||| ||||||||||||||||||| ||||||||| |||| |||||||||    
T  5181085 ccgtcccatacccgtattttgaaatcggggaaaacccatacccatacctaaacccagtcaaaa 5181147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 12718815 - 12718753
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccata-ccaaaactcagtcaaa 78  Q
    ||||| ||||| |||||||||||||||||||||| |||||| |||| ||||||||| ||||||    
T  12718815 ccgtctcgtacacgtattatgaaatcggggaaaatccaaactcatacccaaaactccgtcaaa 12718753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 16237347 - 16237286
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||| ||| |||||| |||||||||||||||||||||  |||| | |||||||||||||    
T  16237347 ccgtcccttacccgtattttgaaatcggggaaaacccaaattcatatccaaactcagtcaaa 16237286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 16408988 - 16409053
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || |||||| |||||||||||| ||||||||| |||| ||||||||||||    
T  16408988 ccgtcccatacccgtgttttgaaattggggaaaacccatacccatacccaaacccagtcaaaacgg 16409053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 36187263 - 36187198
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||| ||||||||||||    
T  36187263 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacgg 36187198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 33293580 - 33293509
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||| ||||||| ||| ||| || |||||||||| ||||||||||| |||||| |||| || |||||||||    
T  33293580 cattacccgtcccatacccgtgttttgaaatcgggaaaaacccaaactcatacccaaacccaatcaaaacgg 33293509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 40087485 - 40087442
Alignment:
Q  39 aatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||| || ||||||||| |||||||||||||||||    
T  40087485 aatcggggaaaactcatacccatacccaaactcagtcaaaacgg 40087442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 49250822 - 49250751
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||| ||||||| ||| ||| || ||| |||||||||||| || ||||||||| |||| ||||||||||||    
T  49250822 cattacccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacccagtcaaaacgg 49250751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 24236781 - 24236739
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  24236781 atcggggaaaacccatacccatacctaaacccagtcaaaacgg 24236739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 35069925 - 35069871
Alignment:
Q  24 gtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||| ||||||||||||||||||||||| ||||| |||||| |||  ||||||||    
T  35069925 gtacccgtattatgaaatcggggaaaactcaaactcatacccaaatccagtcaaa 35069871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 35936872 - 35936810
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaa 79  Q
    ||||||| |||||||  | |||||||||||||||||||||| |||||| ||||  ||||||||    
T  35936872 ccgtcccatactcgtgatttgaaatcggggaaaacccaaactcatacccaaaccaagtcaaaa 35936810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 39616357 - 39616403
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||| |||||||||||| || |||||| |||||||||||||||||    
T  39616357 tgaaataggggaaaacccatactcatacccaaactcagtcaaaacgg 39616403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 13020647 - 13020704
Alignment:
Q  25 tactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| || ||||||||||||||||||| ||||||| | |||| ||||||| ||||    
T  13020647 tactcgtgttttgaaatcggggaaaacccatacccataaccaaacccagtcaagacgg 13020704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 19003709 - 19003648
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||| ||| |||||| || ||||||||||||||| |||||||||| ||||  |||||||    
T  19003709 ccgtcccatacccgtattttgtaatcggggaaaacccgaacccatacccaaacctagtcaaa 19003648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 23058512 - 23058573
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| |||||||| ||| ||||||||| |||||| |||||||||||  |||| ||||||||    
T  23058512 ccgtctcgtactcgcattttgaaatcggagaaaactcaaacccatactcaaacccagtcaaa 23058573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 29871309 - 29871264
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacg 81  Q
    ||||||||| |||||||||||| |||||| ||||| ||||||||||    
T  29871309 tgaaatcggagaaaacccaaactcatacccaaacttagtcaaaacg 29871264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 44615518 - 44615453
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || | ||||| |||||||||||||| |||||| |||| ||||||||||||    
T  44615518 ccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtcaaaacgg 44615453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 44793051 - 44793116
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || | ||||| |||||||||||||| |||||| |||| ||||||||||||    
T  44793051 ccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtcaaaacgg 44793116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 17135012 - 17135056
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaac 80  Q
    ||||||||||||||||||| ||||| ||| |||| ||||||||||    
T  17135012 tgaaatcggggaaaacccatacccacacccaaacccagtcaaaac 17135056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 23490791 - 23490751
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaac 80  Q
    ||||||||||||||| ||||||||| |||| ||||||||||    
T  23490791 atcggggaaaacccatacccatacccaaacccagtcaaaac 23490751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 23968619 - 23968687
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaa 79  Q
    ||||| ||||||| ||| ||| || ||||| ||||||||||||| ||||||||| |||| || ||||||    
T  23968619 cattacccgtcccatacccgtgttttgaaaccggggaaaacccatacccatacccaaacccaatcaaaa 23968687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 3014 - 3075
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    |||||| |||| |||||| |||||||||||||||||||||| |||||| |||| ||||||||    
T  3014 ccgtcctgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacccagtcaaa 3075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 20399637 - 20399702
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  20399637 ccgtcccatacccgtgttttgaaatcggagaaaacccaaacccatacccaaacccagtcaaaacgg 20399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 6388538 - 6388494
Alignment:
Q  38 aaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||    
T  6388538 aaatcggggaagacccaaacccatacccaaactcagtcaaaacgg 6388494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 27932459 - 27932523
Alignment:
Q  18 cgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||| ||| ||| || ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  27932459 cgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgg 27932523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 15068629 - 15068570
Alignment:
Q  19 gtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||| | || ||||||||    
T  15068629 gtcccgtacccgtattttgaaatcggggaaaacccgaacccatacccagacccagtcaaa 15068570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 15173923 - 15173862
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||| |||||| |||||||||| ||||| ||||| |||||| |||| ||||||||    
T  15173923 ccgtcccgtacccgtattttgaaatcgggaaaaactcaaacacatacccaaacccagtcaaa 15173862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 1012684 - 1012727
Alignment:
Q  38 aaatcggggaaaacccaaacccataccaaaactcagtcaaaacg 81  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||    
T  1012684 aaatcggggaaaacccaaactcatacccaaactcaatcaaaacg 1012727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 17220776 - 17220819
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaa 79  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||||    
T  17220776 tgaaatcggggaaaatccatacccatacccaaactcagtcaaaa 17220819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 32392440 - 32392377
Alignment:
Q  6 attctcattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaac 69  Q
    |||||||||| | ||||| ||||||| || |||||||| | |||||||||| ||||||||||||    
T  32392440 attctcattatctgtcccatactcgtgttttgaaatcgagaaaaacccaaatccataccaaaac 32392377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 45236104 - 45236175
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||| ||||||| ||| ||| || ||||||| |||||||| || ||||||||  |||||||||||||||||    
T  45236104 cattacccgtcccatacccgtgttttgaaatcagggaaaactcatacccatactcaaactcagtcaaaacgg 45236175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 32303129 - 32303171
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  32303129 atcggggaaaacccatacccatacccaaacccagtcaaaacgg 32303171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 5858695 - 5858630
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || | |||||||| |||||||||||||||||| |||| || |||||||||    
T  5858695 ccgtcccatacccgtgtttttaaatcgggaaaaacccaaacccatacccaaacccaatcaaaacgg 5858630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 29108844 - 29108800
Alignment:
Q  38 aaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||||| |||||||| ||||||||| |||| ||||||||||||    
T  29108844 aaatcgggaaaaacccatacccatacccaaacccagtcaaaacgg 29108800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 37960984 - 37960940
Alignment:
Q  38 aaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    |||||||||||||||||||| |||||| ||||  |||||||||||    
T  37960984 aaatcggggaaaacccaaactcatacccaaacctagtcaaaacgg 37960940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 48390860 - 48390795
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  48390860 ccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgg 48390795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 4016068 - 4016022
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||    
T  4016068 tgaaatcggggaaaacccaaacccatacccaaacctagtcaaaacgg 4016022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 4557329 - 4557283
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  4557329 tgaaaacggggaaaacccaaacccatacccaaacccagtcaaaacgg 4557283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 6738429 - 6738383
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  6738429 tgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgg 6738383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 23154089 - 23154043
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  23154089 tgaaatcggggaaaacccatacccatacccaaactcagttaaaacgg 23154043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 30616305 - 30616259
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||    
T  30616305 tgaaatcggggaaaacccaaacccatactcaaattcagtcaaaacgg 30616259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 35687534 - 35687473
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| ||||| ||||||||||||||||||||||| ||||| |||||  |||| ||||||||    
T  35687534 ccgtctcgtacccgtattatgaaatcggggaaaactcaaactcatactcaaacccagtcaaa 35687473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 49580109 - 49580174
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||| ||||||||||||    
T  49580109 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacgg 49580174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 2490344 - 2490411
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||| |||| | |||| |||||| |||||||||||||||| |||||||||| | |||| ||||||||    
T  2490344 cattacccgttctgtacccgtattttgaaatcggggaaaactcaaacccatatccaaacccagtcaaa 2490411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 20087061 - 20087107
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||| ||||||| | |||| ||||||||||||    
T  20087061 tgaaatcggggaaaacccatacccatatccaaacccagtcaaaacgg 20087107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 34026018 - 34026064
Alignment:
Q  36 tgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||||||| ||||||| | |||| ||||||||||||    
T  34026018 tgaaatcggggaaaacccatacccatatccaaacccagtcaaaacgg 34026064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 44252815 - 44252857
Alignment:
Q  40 atcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  44252815 atcggggaaaacccatacccatacccaaacccagtcaaaacgg 44252857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 23580880 - 23580937
Alignment:
Q  25 tactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| || |||||| ||||||||| || ||||||||| |||| ||||||||||||    
T  23580880 tactcgtgttttgaaattggggaaaactcatacccatacccaaacccagtcaaaacgg 23580937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 39655316 - 39655251
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||||||| |||| || |||||||||    
T  39655316 ccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccaatcaaaacgg 39655251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 44953478 - 44953413
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacgg 82  Q
    ||||||| ||| ||| || ||| ||||||||||||||| ||||| ||| |||| ||||||||||||    
T  44953478 ccgtcccatacccgtgttttgagatcggggaaaacccatacccaaacccaaacccagtcaaaacgg 44953413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 33438 - 33490
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaac 69  Q
    ||||||| ||| ||| || ||||||||||||||||||||||||||||| ||||    
T  33438 ccgtcccatacccgtgttttgaaatcggggaaaacccaaacccatacccaaac 33490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 67794 - 67855
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||  |||||| | ||||||||||||| ||||||||||||  |||| ||||||||    
T  67794 ccgtcccgtatccgtattttaaaatcggggaaaatccaaacccatactcaaacccagtcaaa 67855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 75637 - 75698
Alignment:
Q  17 ccgtcccgtactcgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||  |||||| | ||||||||||||| ||||||||||||  |||| ||||||||    
T  75637 ccgtcccgtatccgtattttaaaatcggggaaaatccaaacccatactcaaacccagtcaaa 75698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 128170 - 128118
Alignment:
Q  11 cattaaccgtcccgtactcgtattatgaaatcggggaaaacccaaacccatac 63  Q
    ||||| ||||||||||| ||||||||||||| ||  ||||||||||| |||||    
T  128170 cattacccgtcccgtacccgtattatgaaattggaaaaaacccaaactcatac 128118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 449768 - 449808
Alignment:
Q  38 aaatcggggaaaacccaaacccataccaaaactcagtcaaa 78  Q
    ||||||||||||||||||||||| ||| |||| ||||||||    
T  449768 aaatcggggaaaacccaaacccaaacccaaacccagtcaaa 449808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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