View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13888_low_1 (Length: 451)
Name: NF13888_low_1
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13888_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 24 - 438
Target Start/End: Complemental strand, 38976446 - 38976032
Alignment:
| Q |
24 |
ttcaaaggcctatctaaaaaatatggtgatgtcatttcactttggtttggttcacgtcttgtggttgttgtctcttcaccatctttagtccaagaatgtt |
123 |
Q |
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| T |
38976446 |
ttcaaaggcctatctaaaaaatatggtgatgtcatttcactttggtttggttcacgtcttgtggttgttgtctcttcaccatctttagtccaagaatgtt |
38976347 |
T |
|
| Q |
124 |
ttacaaaaaacgacgttgtcctagctaatagaccccgttttctctccggaaaatacatcttttacaactataccaccttaggaacaacaacctacggtga |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38976346 |
ttacaaaaaacgacgttgtcctagctaatagaccccgttttctctccggaaaatacatcttttacaactataccaccttaggatcaacaacctacggtga |
38976247 |
T |
|
| Q |
224 |
acattggcgcaaccttcgtcgcattaccgcaattgatgttctttcaaaccaccgtatcaatagttcatccagaatccgaagggatgagactcagaggctt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38976246 |
acattggcgcaaccttcgtcgcattaccgcaattgatgttctttcaaaccaccgtatcaatagttcatccggaatccgaagggatgagactcagaggctt |
38976147 |
T |
|
| Q |
324 |
gtaaaaaagctagccgaagaatcgtcgtctaaagagtttgtcgaagtagaactaagatctaggttctttgatatgactttcaataacataatgagaatga |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38976146 |
gtaaaaaagctagccgaagaatcgtcgtctaaagagtttgtcgaagtagaactaagatctagattctttgatatgactttcaataacataatgagaatga |
38976047 |
T |
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| Q |
424 |
tctcgggtaagagat |
438 |
Q |
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| T |
38976046 |
tctcgggtaagagat |
38976032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 40 - 283
Target Start/End: Original strand, 38954028 - 38954271
Alignment:
| Q |
40 |
aaaaatatggtgatgtcatttcactttggtttggttcacgtcttgtggttgttgtctcttcaccatctttagtccaagaatgttttacaaaaaacgacgt |
139 |
Q |
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|||| |||||| | || ||||| ||||||||||||||||||||||| || ||||| ||||||| || | | |||||||||||||||||||||||||| |
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| T |
38954028 |
aaaagtatggtaacgtgatttccctttggtttggttcacgtcttgttgtcgttgtttcttcactttccgaatttcaagaatgttttacaaaaaacgacgt |
38954127 |
T |
|
| Q |
140 |
tgtcctagctaatagaccccgttttctctccggaaaatacatcttttacaactataccaccttaggaacaacaacctacggtgaacattggcgcaacctt |
239 |
Q |
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||||||||| |||||||| || ||| | ||||||||||| || || ||||| || ||||| |||||| | || ||||||||||||| ||||| |||||| |
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| T |
38954128 |
tgtcctagcaaatagaccacggtttttatccggaaaatatattttctacaattacaccactttaggatctacctcctacggtgaacactggcgtaacctt |
38954227 |
T |
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| Q |
240 |
cgtcgcattaccgcaattgatgttctttcaaaccaccgtatcaa |
283 |
Q |
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| T |
38954228 |
cgtcgtatcacttcccttgatgttctttcaaaccaccgtatcaa |
38954271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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