View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13888_low_2 (Length: 449)
Name: NF13888_low_2
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13888_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 43439431 - 43439858
Alignment:
| Q |
18 |
gattggaaaagcttggacaatttgttcacttcaa---atcaatttacagatacagctaattacttttcaaatcaaaatagcatgccattgatgatacctc |
114 |
Q |
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| T |
43439431 |
gattggaaaagcttggacaatttgttcacttcaacaaatcaatttacagatacagctaattacttttcaaatcaaaatagcatgccattgatgatacctc |
43439530 |
T |
|
| Q |
115 |
atagtcaacatgagctacaatctcatcaaaatcaagctaatcatatcttaggctgctttcctgattcataacttgagtgtgacannnnnnnnnnnnnnnn |
214 |
Q |
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| T |
43439531 |
atagtcaacatgagctacaatctcatcaaaatcaagctaatcatatcttaggttgctttcctgattcataacttgagtgtgacaatatatatattcatat |
43439630 |
T |
|
| Q |
215 |
nnnnnngccaataagtaagatgatatggattcattatatcttagttttccatttcatcttactacaaaactaatttagaattttctgatattatatacat |
314 |
Q |
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| T |
43439631 |
attatagccaataagtaagatgatatggattcattatatcttagttttccatttcatcttactacaaagctaatttagaattttctgatattatatacat |
43439730 |
T |
|
| Q |
315 |
tttttaagtgataatggagattcacttgaagagtgacctaactccataatttgtttagagttcataattttctttctttcttttggattaccaattataa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439731 |
tttttaagtgataatggagattcacttgaagagtgacctagctccataatttgtttagagttcataattttctttctttcttttggattaccaattataa |
43439830 |
T |
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| Q |
415 |
gtttaactttgtactgtgtcctttgcta |
442 |
Q |
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| T |
43439831 |
gtttaactttgtactgtgtccttggcta |
43439858 |
T |
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