View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13888_low_4 (Length: 385)
Name: NF13888_low_4
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13888_low_4 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 24493 - 24123
Alignment:
| Q |
1 |
atacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggacggaacactctccgatcaggtgaaactcaatggtggccggatacc |
100 |
Q |
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| T |
24493 |
atacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggccggaacactctccgatcaggtgaaactcaatggtggccggatacc |
24394 |
T |
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| Q |
101 |
ggagcaacacattcgtctttacacgaggtcaatcgtcgagggacttgatcatattcatcgcaatggattcgttcattgtgatataaagcttcaaaatatt |
200 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24393 |
ggagcaacacattcgtcgttacacgaggtcaatcgttgagggacttgatcacattcatcgcaatggatttgttcattgtgatataaagcttcaaaatatt |
24294 |
T |
|
| Q |
201 |
ttggtattcaatgatggtgaaatcaaaattgctgattttggtcttgccaagaaaacaggggaaaaacagagttttgaatgcagaggaaccccacttttta |
300 |
Q |
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| T |
24293 |
ttggtattcaatgatggtgaaatcaaaattgctgattttggtcttgccaagaaaacaggggaaaaacagagttttgaatgcagaggaaccccgcttttta |
24194 |
T |
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| Q |
301 |
tgtcacccgaatcagtaaacaatggcgagcatgaatctccggcggatatttgggcacttgggtgtgcagtg |
371 |
Q |
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| T |
24193 |
tgtcgccggaatcagtaaacaatggcgagcatgaatctccggcggatatttgggcacttgggtgtgcagtg |
24123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 3 - 371
Target Start/End: Complemental strand, 15071 - 14703
Alignment:
| Q |
3 |
acttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggacggaacactctccgatcaggtgaaactcaatggtggccggataccgg |
102 |
Q |
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| T |
15071 |
acttttgagaatggcaaagagtattacaatttattcctcgaatacgcttctgcgggttctctctccgatcaggtgaaactcaatggtggccggataccgg |
14972 |
T |
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| Q |
103 |
agcaacacattcgtctttacacgaggtcaatcgtcgagggacttgatcatattcatcgcaatggattcgttcattgtgatataaagcttcaaaatatttt |
202 |
Q |
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| T |
14971 |
agcaacacattcgtcgttacacgaggtcaatcgttgagggacttgatcacattcatcgcaatggatttgttcattgtgatataaagcttcaaaatatttt |
14872 |
T |
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| Q |
203 |
ggtattcaatgatggtgaaatcaaaattgctgattttggtcttgccaagaaaacaggggaaaaacagagttttgaatgcagaggaaccccactttttatg |
302 |
Q |
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| T |
14871 |
ggttttcaatgatggtgaaatcaaaattgctgattttggtcttgccaagaaaacaggggaaaaacagagttttgaatgcagaggaaccccgctttttatg |
14772 |
T |
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| Q |
303 |
tcacccgaatcagtaaacaatggcgagcatgaatctccggcggatatttgggcacttgggtgtgcagtg |
371 |
Q |
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| T |
14771 |
tcgccggaatcagtaaacaatggcgagcatgaatctcccgcggatatttgggcacttgggtgtgcagtg |
14703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 265 - 629
Alignment:
| Q |
3 |
acttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggacggaacactctccgatcaggtgaaactcaatggtggccggataccgg |
102 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| || | || || |||||||||||||||||||||||||||||||||||||||| |
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| T |
265 |
acttttgagaatggcaaagagtattacaatttattcctcgaatacgcttctgcgggtactctctccgatcaggtgaaactcaatggtggccggataccgg |
364 |
T |
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| Q |
103 |
agcaacacattcgtctttacacgaggtcaatcgtcgagggacttgatcatattcatcgcaatggattcgttcattgtgatataaagcttcaaaatatttt |
202 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
365 |
agcaacacattcgtcgttacacgaggtcaatcgttgagggacttgatcacattcatcgcaatggatttgttcattgtgatataaagcttcaaaatatttt |
464 |
T |
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| Q |
203 |
ggtattcaatgatggtgaaatcaaaattgctgattttggtcttgccaagaaaacaggggaaaaacagagttttgaatgcagaggaaccccactttttatg |
302 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||| |
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| T |
465 |
ggtgttcaatgatggtgaaatcaaaattgctgattttggtcttgccaagaaaacagggggaaaacagagtttgaaatgcaggggaactccactttttatg |
564 |
T |
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| Q |
303 |
tcacccgaatcagtaaacaatggcgagcatgaatctccggcggatatttgggcacttgggtgtgc |
367 |
Q |
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| T |
565 |
tcgccggaatcagtaaaccacggtgagcatgaatctccggcggatatatgggcacttgggtgtgc |
629 |
T |
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