View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13888_low_7 (Length: 306)
Name: NF13888_low_7
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13888_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 40 - 306
Target Start/End: Complemental strand, 36891248 - 36890982
Alignment:
| Q |
40 |
catcatccctatagagaagaaataatataaagtggtgtagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgat |
139 |
Q |
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| T |
36891248 |
catcaaccctatagagaagaaataatataaagtggtatagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgat |
36891149 |
T |
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| Q |
140 |
ctcattgctttttcatgatccagtggttccacgagtatgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttatat |
239 |
Q |
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| T |
36891148 |
ctcattgttttttcatgatccagtggttccacgagtatgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttatat |
36891049 |
T |
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| Q |
240 |
gtcataatataaatgttacataattctccaacacatgtatatggacttacagtggtataggattcgc |
306 |
Q |
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| T |
36891048 |
gtcataatataaatgttacataattctccaacacatgtatatgtacttacagtggtataggattcgc |
36890982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 64 - 204
Target Start/End: Complemental strand, 36878162 - 36878022
Alignment:
| Q |
64 |
atataaagtggtgtagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgctttttcatgatccagt |
163 |
Q |
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| T |
36878162 |
atataaagtggtatagttatctggtaacttcatcttgttggaatctgaaccagcctccatctttctcaaatttgacctcattgctttttcatgatccagt |
36878063 |
T |
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| Q |
164 |
ggttccacgagtatgccttaatttggcaacaaacaaattaa |
204 |
Q |
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| T |
36878062 |
ggttccacgagtatgccttaatttgtcaacaaacaaattaa |
36878022 |
T |
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