View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13888_low_9 (Length: 300)
Name: NF13888_low_9
Description: NF13888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13888_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 42535182 - 42535453
Alignment:
| Q |
12 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
111 |
Q |
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| T |
42535182 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
42535281 |
T |
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| Q |
112 |
tgccaaggtcctaacctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
211 |
Q |
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| T |
42535282 |
tgccaaggtcctaacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
42535381 |
T |
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| Q |
212 |
tggatcaacatcacttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagatt |
283 |
Q |
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| T |
42535382 |
tggatcaacatcagttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagatt |
42535453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 42529460 - 42529731
Alignment:
| Q |
12 |
acagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaa |
111 |
Q |
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| T |
42529460 |
acagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttttgttgtaaaatttgatgatgttaa |
42529559 |
T |
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| Q |
112 |
tgccaaggtcctaacctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgat |
211 |
Q |
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| T |
42529560 |
tgtcaaggtcttaacctactctgcgcaagatagtatgttcaaggtttttgaccttaaaaactacacttttctatactcgttttcatttagcaatgttcaa |
42529659 |
T |
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| Q |
212 |
tggatcaacatcacttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagatt |
283 |
Q |
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| T |
42529660 |
cggatcaacatcagttctggcatcatgttattcatcttccaaagaagaagtgatcatattccaatcaagatt |
42529731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 27822153 - 27822207
Alignment:
| Q |
90 |
ttgtgaaatttgatgatgttaatgccaaggtcctaacctactctccgcaagatag |
144 |
Q |
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| T |
27822153 |
ttgtggaatttgatgatgttaatgcaaaggtcctaacatactctgcgcaggatag |
27822207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 27822084 - 27822138
Alignment:
| Q |
33 |
acataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
87 |
Q |
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|||||| |||||||||||||||||| |||||| |||||| ||||| |||||||| |
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| T |
27822084 |
acataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 27822302 - 27822347
Alignment:
| Q |
143 |
agtatattcaaggtttttgatcttaaaaactacacttttctatact |
188 |
Q |
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| T |
27822302 |
agtatatacaaggtcttcgatcttaaaaactacactttgctatact |
27822347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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