View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13889_high_8 (Length: 247)

Name: NF13889_high_8
Description: NF13889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13889_high_8
NF13889_high_8
[»] chr3 (20 HSPs)
chr3 (71-223)||(23952911-23953064)
chr3 (9-70)||(50957744-50957805)
chr3 (13-70)||(2743332-2743389)
chr3 (9-70)||(9429927-9429988)
chr3 (8-52)||(13743246-13743290)
chr3 (12-71)||(13747798-13747857)
chr3 (8-70)||(1294153-1294215)
chr3 (1-52)||(40871886-40871937)
chr3 (1-71)||(8156441-8156511)
chr3 (10-71)||(3953294-3953355)
chr3 (14-71)||(4330726-4330783)
chr3 (10-47)||(14043976-14044013)
chr3 (21-70)||(19842439-19842488)
chr3 (10-47)||(20485614-20485651)
chr3 (9-70)||(50953236-50953297)
chr3 (10-66)||(6745405-6745461)
chr3 (10-78)||(27739645-27739713)
chr3 (1-45)||(34648273-34648317)
chr3 (39-71)||(35743688-35743720)
chr3 (24-72)||(40871080-40871128)
[»] chr4 (11 HSPs)
chr4 (9-74)||(15995652-15995717)
chr4 (9-71)||(15999877-15999939)
chr4 (9-68)||(19069123-19069182)
chr4 (10-70)||(3403782-3403842)
chr4 (8-73)||(33410306-33410371)
chr4 (8-72)||(51036436-51036500)
chr4 (11-52)||(33051732-33051773)
chr4 (8-51)||(33409481-33409524)
chr4 (39-74)||(37562995-37563030)
chr4 (13-47)||(28084069-28084103)
chr4 (1-45)||(40962914-40962958)
[»] chr1 (20 HSPs)
chr1 (9-73)||(30910081-30910145)
chr1 (8-70)||(29356748-29356810)
chr1 (8-74)||(41453769-41453835)
chr1 (8-70)||(44470087-44470149)
chr1 (21-67)||(6557853-6557899)
chr1 (8-52)||(41459287-41459331)
chr1 (9-52)||(1167514-1167557)
chr1 (8-71)||(19914400-19914463)
chr1 (8-71)||(19928922-19928985)
chr1 (10-47)||(12627197-12627234)
chr1 (1-46)||(21700912-21700957)
chr1 (24-73)||(50037363-50037412)
chr1 (13-49)||(5330095-5330131)
chr1 (39-71)||(8548777-8548809)
chr1 (1-41)||(13149080-13149120)
chr1 (10-66)||(20354014-20354070)
chr1 (10-66)||(20556836-20556892)
chr1 (10-66)||(38771567-38771623)
chr1 (14-46)||(47653786-47653818)
chr1 (14-46)||(50036806-50036838)
[»] chr5 (9 HSPs)
chr5 (8-71)||(13563601-13563664)
chr5 (8-70)||(13838500-13838562)
chr5 (9-70)||(7017446-7017507)
chr5 (8-70)||(34080148-34080210)
chr5 (8-73)||(7021934-7021999)
chr5 (8-47)||(8539592-8539631)
chr5 (10-73)||(14280979-14281042)
chr5 (10-71)||(37814515-37814576)
chr5 (8-52)||(27532693-27532737)
[»] chr2 (13 HSPs)
chr2 (13-75)||(3803625-3803687)
chr2 (20-70)||(3795271-3795321)
chr2 (12-74)||(40220570-40220632)
chr2 (11-70)||(43313438-43313497)
chr2 (10-71)||(4286028-4286089)
chr2 (11-70)||(26544068-26544127)
chr2 (8-70)||(4286777-4286839)
chr2 (8-72)||(31568658-31568722)
chr2 (8-70)||(40156334-40156396)
chr2 (10-71)||(208943-209004)
chr2 (9-70)||(958686-958747)
chr2 (1-70)||(10424774-10424843)
chr2 (10-66)||(5351811-5351867)
[»] scaffold0513 (1 HSPs)
scaffold0513 (12-71)||(8133-8192)
[»] chr7 (13 HSPs)
chr7 (8-70)||(7974874-7974936)
chr7 (8-71)||(8123-8186)
chr7 (8-71)||(48590415-48590478)
chr7 (11-52)||(42808782-42808823)
chr7 (8-70)||(7004-7066)
chr7 (11-73)||(48589737-48589799)
chr7 (8-70)||(19072372-19072434)
chr7 (1-46)||(14101407-14101452)
chr7 (1-46)||(14411424-14411469)
chr7 (12-45)||(48900820-48900853)
chr7 (14-70)||(603713-603769)
chr7 (10-66)||(30791087-30791143)
chr7 (10-70)||(31324883-31324943)
[»] chr6 (4 HSPs)
chr6 (24-70)||(13388795-13388841)
chr6 (9-47)||(9391214-9391252)
chr6 (8-70)||(27641828-27641890)
chr6 (39-71)||(30825983-30826015)
[»] scaffold0188 (1 HSPs)
scaffold0188 (8-52)||(27992-28036)
[»] chr8 (10 HSPs)
chr8 (8-74)||(35555248-35555314)
chr8 (8-73)||(2335224-2335289)
chr8 (8-73)||(44934560-44934625)
chr8 (10-74)||(7344636-7344700)
chr8 (39-72)||(22014178-22014211)
chr8 (10-47)||(31745140-31745177)
chr8 (8-45)||(34798884-34798921)
chr8 (13-66)||(40740845-40740898)
chr8 (7-47)||(37651774-37651814)
chr8 (10-46)||(41472092-41472128)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 23953064 - 23952911
Alignment:
Q  71 aaaatcaaatgggccgggctttcaaattgtaataagtccaaacaaaaaataacatcgaatcaaaacgacatcgttgagatcttcatcttccatttccaaa 170  Q
    ||||||| ||| |||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23953064 aaaatcagatgagccgggctttcatattgtaataagcccaaacaaaaaataacatcgaaccaaaacgacatcgttgagatcttcatcttccatttccaaa 23952965  T
Q  171 caccgagtattctctcct-ctctcgttatccctcttctaaaccccgaacgaaga 223  Q
    || ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  23952964 caacgagtattctctcctcctctcgtcatccctcttctaaaccccgaacgaaga 23952911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 50957744 - 50957805
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50957744 ggggtatttggataatttacttgtgtttctcagccaaacaacatgtgggaacagcaattctc 50957805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 2743389 - 2743332
Alignment:
Q  13 tatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  2743389 tatttgggtaatttacttgtgtttctcagccaaacaacatgtgggaacaacaattctc 2743332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 9429927 - 9429988
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9429927 ggggtatttgcgtaatttacttgtgtttctcagccaaacaccatgtgggaacagcaattctc 9429988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 13743290 - 13743246
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacat 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  13743290 aggggtatttgggtaatttacatgtgtttctcagccaaacaacat 13743246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 13747798 - 13747857
Alignment:
Q  12 gtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    |||||||| |||||||| ||||||| ||||||||||||||| |||||||| |||||||||    
T  13747798 gtatttggataatttacatgtgtttatcagccaaacaacatgtgggaacaacaattctca 13747857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 1294153 - 1294215
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||  |||| ||||||||    
T  1294153 aggggtatttgggtaatttactcgtgtttctcagtcaaacaacatgtgtcaacaacaattctc 1294215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40871886 - 40871937
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcagccaaacaacat 52  Q
    ||||| ||||||||||| | || ||||| |||||||||||||||||||||||    
T  40871886 actgccaaggggtattttgatattttacatgtgtttctcagccaaacaacat 40871937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8156511 - 8156441
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||| || |||||||| |||| |||||| ||||  | |||||||||||||| ||||||||||||| ||||    
T  8156511 actgccaaagggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaatactca 8156441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 3953294 - 3953355
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| ||||||||||||| ||||    
T  3953294 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaatactca 3953355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 4330783 - 4330726
Alignment:
Q  14 atttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||| |||||||||  ||||||| ||||||||| | || ||||||||||||||||||    
T  4330783 atttgagtaatttacccgtgtttcccagccaaaccaaatgtgggaacagcaattctca 4330726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 14043976 - 14044013
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaac 47  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  14043976 gggtatttgggtaaattactcgtgtttctcagccaaac 14044013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 19842488 - 19842439
Alignment:
Q  21 taatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||||||||||||||| ||||| | || || ||||||||||||||    
T  19842488 taatttacttgtgtttctcagacaaaccaaatgtgtgaacagcaattctc 19842439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 20485614 - 20485651
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaac 47  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  20485614 gggtatttgggtaaattactcgtgtttctcagccaaac 20485651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 50953297 - 50953236
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||| | ||||||| |||||||||||||| ||||||| | || ||||| ||||||||    
T  50953297 ggggtatttagataatttagttgtgtttctcagctaaacaacgtgtgcgaacaacaattctc 50953236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 6745405 - 6745461
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaat 66  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| |||||||||||||    
T  6745405 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaat 6745461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 27739645 - 27739713
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaaatcaa 78  Q
    ||||||||| |||||||||| ||||  | ||||||||| | |  |||||||| ||||||||||||||||    
T  27739645 gggtatttgagtaatttactcgtgtggcacagccaaaccaaaagtgggaacaacaattctcaaaatcaa 27739713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34648273 - 34648317
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcagccaa 45  Q
    |||||| ||||||||||| |||| |||| ||||||||||||||||    
T  34648273 actgctgaggggtatttgagtaaattacatgtgtttctcagccaa 34648317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 35743688 - 35743720
Alignment:
Q  39 cagccaaacaacatttgggaacagcaattctca 71  Q
    |||||||||||||| ||||||||||||||||||    
T  35743688 cagccaaacaacatgtgggaacagcaattctca 35743720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 40871128 - 40871080
Alignment:
Q  24 tttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaa 72  Q
    ||||| ||||||||||||||||||||||| ||  | |||||||||||||    
T  40871128 tttacatgtgtttctcagccaaacaacatatgtcatcagcaattctcaa 40871080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 15995717 - 15995652
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaaa 74  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15995717 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatgtgggaacagcaattctcaaaa 15995652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 15999877 - 15999939
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  15999877 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatgtgggaacaacaattctca 15999939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 19069182 - 19069123
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  19069182 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatgtgggaacaacaattc 19069123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 3403842 - 3403782
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||| ||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  3403842 gggtatttgcgtaatttacttgtatttctcagccaaacaacaagtgggaacagcaattctc 3403782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 33410306 - 33410371
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaa 73  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||| ||  | ||||||||||||||    
T  33410306 aggggtattttggtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaaa 33410371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 51036500 - 51036436
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaa 72  Q
    ||||| |||||||||| ||||| ||||||||||| ||||| | || |||||||||||||||||||    
T  51036500 aggggcatttgggtaaattactagtgtttctcaggcaaaccaaatgtgggaacagcaattctcaa 51036436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 33051732 - 33051773
Alignment:
Q  11 ggtatttgggtaatttacttgtgtttctcagccaaacaacat 52  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  33051732 ggtatttgaataatttacttgtgtttctcagccaaacaacat 33051773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 33409524 - 33409481
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaaca 51  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||    
T  33409524 aggggtattttggtattttacatgtgtttctcagccaaacaaca 33409481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 37563030 - 37562995
Alignment:
Q  39 cagccaaacaacatttgggaacagcaattctcaaaa 74  Q
    |||||||||||||| |||||||||||||||||||||    
T  37563030 cagccaaacaacatgtgggaacagcaattctcaaaa 37562995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 28084069 - 28084103
Alignment:
Q  13 tatttgggtaatttacttgtgtttctcagccaaac 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  28084069 tatttgagtaatttacttgtgtttctcagccaaac 28084103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40962958 - 40962914
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcagccaa 45  Q
    ||||| |||||| |||||||||| ||||| |||||||||||||||    
T  40962958 actgccaaggggcatttgggtaaattactcgtgtttctcagccaa 40962914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 30910081 - 30910145
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30910081 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatgtgggaacagcaattctcaaa 30910145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 29356748 - 29356810
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  29356748 aggggtatttggataatttacttgtgtttctcagccaaacaacatgtgggaacaacaattctc 29356810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 41453835 - 41453769
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaaa 74  Q
    |||||| |||| |||||||||| |||||||||||||||||||||  |||||||| ||||||||||||    
T  41453835 aggggtgtttgcgtaatttactagtgtttctcagccaaacaacaagtgggaacaacaattctcaaaa 41453769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 44470087 - 44470149
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||||| |||||||  ||||||||||||||||||||||| ||  |||||||||||||    
T  44470087 aggggtatttggataatttaaatgtgtttctcagccaaacaacatgtgtcaacagcaattctc 44470149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 6557899 - 6557853
Alignment:
Q  21 taatttacttgtgtttctcagccaaacaacatttgggaacagcaatt 67  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||    
T  6557899 taatttacttgtgtttctcaacaaaacaacatgtgggaacagcaatt 6557853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 41459287 - 41459331
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacat 52  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||    
T  41459287 aggggtattttggtattttacatgtgtttctcagccaaacaacat 41459331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 1167557 - 1167514
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacat 52  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||    
T  1167557 ggggtattttggtattttacttgtgtttctcagccaaaccacat 1167514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 19914463 - 19914400
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||| ||||| |||||||||| ||||  | |||||||||||||| |||||||| |||||||||    
T  19914463 aggggcatttgagtaatttactcgtgtggcacagccaaacaacatgtgggaacaacaattctca 19914400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 19928922 - 19928985
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||| |||| |||| |||||| ||||  | |||||||||||||| ||||||||||||||||||    
T  19928922 aggggcattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctca 19928985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 12627234 - 12627197
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaac 47  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  12627234 gggtatttgggtaaattactcgtgtttctcagccaaac 12627197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21700912 - 21700957
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcagccaaa 46  Q
    |||||| ||||| |||||||||| ||||| ||||||||||||||||    
T  21700912 actgcttaggggcatttgggtaaattactagtgtttctcagccaaa 21700957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 50037363 - 50037412
Alignment:
Q  24 tttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaa 73  Q
    ||||| ||||||||||||||||||||||| ||   |||||||||||||||    
T  50037363 tttacatgtgtttctcagccaaacaacatgtgtatacagcaattctcaaa 50037412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 5330095 - 5330131
Alignment:
Q  13 tatttgggtaatttacttgtgtttctcagccaaacaa 49  Q
    |||||| |||||||||| |||||||||||||||||||    
T  5330095 tatttgagtaatttactcgtgtttctcagccaaacaa 5330131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 8548777 - 8548809
Alignment:
Q  39 cagccaaacaacatttgggaacagcaattctca 71  Q
    |||||||||||||| ||||||||||||||||||    
T  8548777 cagccaaacaacatgtgggaacagcaattctca 8548809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13149080 - 13149120
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcag 41  Q
    |||||| ||||||||||| |||||||||| |||||||||||    
T  13149080 actgctgaggggtatttgagtaatttactcgtgtttctcag 13149120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 20354014 - 20354070
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaat 66  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| |||||||||||||    
T  20354014 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaat 20354070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 20556892 - 20556836
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaat 66  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| |||||||||||||    
T  20556892 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaat 20556836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 38771623 - 38771567
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaat 66  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| |||||||||||||    
T  38771623 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaat 38771567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 47653786 - 47653818
Alignment:
Q  14 atttgggtaatttacttgtgtttctcagccaaa 46  Q
    |||||||||| ||||||||||||||||||||||    
T  47653786 atttgggtaaattacttgtgtttctcagccaaa 47653818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 50036838 - 50036806
Alignment:
Q  14 atttgggtaatttacttgtgtttctcagccaaa 46  Q
    ||||| |||||||||||||||||||||||||||    
T  50036838 atttgagtaatttacttgtgtttctcagccaaa 50036806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 13563664 - 13563601
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  13563664 aggggtatttgggtaatttacatgtgtttctcagccaaacaacatgtgggaacagcaattctca 13563601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 13838500 - 13838562
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||  |||||||||||||    
T  13838500 aggggtatttgggtaatttactcgtgtttctcagccaaacaacatgtgtcaacagcaattctc 13838562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 7017507 - 7017446
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||    
T  7017507 ggggtatttgggtaatttacttgtgtttttcagccaaacaacatgtggcaacaacaattctc 7017446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 34080148 - 34080210
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| ||  |||||||||||||    
T  34080148 aggggtatttgggtaatttacttgtgtttatcagccaaccaacatgtgtcaacagcaattctc 34080210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 7021934 - 7021999
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaa 73  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||  |||||||| |||||||||||    
T  7021934 aggggtgtttgcgtaatgtacttgtgtttctcagccaaacaacaagtgggaacaacaattctcaaa 7021999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 8539592 - 8539631
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaac 47  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  8539592 aggggtatttgagtaatttacttgtgtttctcagccaaac 8539631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 14280979 - 14281042
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaa 73  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| ||||||||||||| ||||||    
T  14280979 gggtattttggtattttactcgtgtgacacagccaaacaacatgtgggaacagcaatactcaaa 14281042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 37814576 - 37814515
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||||||  ||| |||||| ||||  | |||||||||||||| ||||||||||||||||||    
T  37814576 gggtatttttgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctca 37814515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 27532693 - 27532737
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacat 52  Q
    |||||||||| |||| ||||| ||||||||||| |||||||||||    
T  27532693 aggggtattttggtattttacatgtgtttctcatccaaacaacat 27532737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 3803625 - 3803687
Alignment:
Q  13 tatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaaat 75  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  3803625 tatttgggtaatttacttgtgtttctcagccaaacaacatgtgggaatagcaattctctaaat 3803687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 3795321 - 3795271
Alignment:
Q  20 gtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  3795321 gtaatttacttgtgtttctcagccaaacaacatgtgggaatagcaattctc 3795271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 40220632 - 40220570
Alignment:
Q  12 gtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaaa 74  Q
    |||||||||||||||||| |||||||||||||||||||||| ||  |||| ||||||||||||    
T  40220632 gtatttgggtaatttactagtgtttctcagccaaacaacatgtgtcaacaacaattctcaaaa 40220570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 43313438 - 43313497
Alignment:
Q  11 ggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||  |||||||||||||    
T  43313438 ggtatttgagtaatttactcgtgtttctcagccaaacaacatgtgccaacagcaattctc 43313497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 4286089 - 4286028
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||  |||| |||||||||    
T  4286089 gggtatttgagtaatttactcgtgtttctcagccaaacaacatgtgtcaacaacaattctca 4286028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 26544068 - 26544127
Alignment:
Q  11 ggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||  |||| ||||||||    
T  26544068 ggtatttggataatttactcgtgtttctcagccaaacaacatgtgtcaacaacaattctc 26544127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 4286777 - 4286839
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||| ||  |||| ||||||||    
T  4286777 aggggtatttgagtaatttactagtgtttctcagccaaagaacatgtgtcaacaacaattctc 4286839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 31568658 - 31568722
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaa 72  Q
    ||||||||||  ||| ||||| ||||||||||||||||||||||| ||  | |||||||||||||    
T  31568658 aggggtattttagtattttacatgtgtttctcagccaaacaacatgtgtaatcagcaattctcaa 31568722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 40156396 - 40156334
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||| ||||| |||||||||| ||||||||||||||||| | || | |||||| ||||||||    
T  40156396 aggggcatttgagtaatttactcgtgtttctcagccaaaccaaatgtaggaacaacaattctc 40156334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 209004 - 208943
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| ||||||||||||| ||||    
T  209004 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaatcctca 208943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 958686 - 958747
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||| |||| |||||| |||||||||||||  | ||||| || ||||||||||||||    
T  958686 ggggtattttggtattttactggtgtttctcagccttataacatgtgtgaacagcaattctc 958747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10424843 - 10424774
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||| ||||| ||||| |||||||||| ||||  | ||||||||| | || |||||||||||||||||    
T  10424843 actgctgaggggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacagcaattctc 10424774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 5351811 - 5351867
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaat 66  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| |||||||||||||    
T  5351811 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaat 5351867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 8192 - 8133
Alignment:
Q  12 gtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  8192 gtatttgggtaatttacttgtgattctcagccaaacaacatgcgggaacagcaattctca 8133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 7974936 - 7974874
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||  |||| ||||||||    
T  7974936 aggggtatttgggtaatttactcgtgtttctcagccaaacaacatgtgtcaacatcaattctc 7974874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 8123 - 8186
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||| ||||| |||||||||||||||  | |||||||||||||| ||||||||||||||||||    
T  8123 aggggcatttgagtaatttacttgtgtggcacagccaaacaacatgtgggaacagcaattctca 8186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 48590415 - 48590478
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctca 71  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||  |||| |||||||||    
T  48590415 aggggtatttgggtaatttactaatgtttctcagccaaacaacatgtgtcaacaacaattctca 48590478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 42808782 - 42808823
Alignment:
Q  11 ggtatttgggtaatttacttgtgtttctcagccaaacaacat 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  42808782 ggtatttggataatttacttgtgtttctcagccaaacaacat 42808823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 7066 - 7004
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||| ||||| |||||||||| ||||  | |||||||||||||| |||||||||||||||||    
T  7066 aggggcatttgagtaatttactcgtgtggcacagccaaacaacatgtgggaacagcaattctc 7004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 48589799 - 48589737
Alignment:
Q  11 ggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaa 73  Q
    ||||||| | ||||||||| |||||||||||||||||||||| ||  |||| |||||||||||    
T  48589799 ggtatttagataatttactcgtgtttctcagccaaacaacatgtgtcaacaacaattctcaaa 48589737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 19072434 - 19072372
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||| ||||| |||||||||| ||||||||||||| ||| | || || ||||||||||||||    
T  19072434 aggggcatttgagtaatttactcgtgtttctcagccgaaccaaatgtgtgaacagcaattctc 19072372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14101452 - 14101407
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcagccaaa 46  Q
    ||||| |||||| ||||| |||||||||| ||||||||||||||||    
T  14101452 actgccaaggggcatttgagtaatttactcgtgtttctcagccaaa 14101407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14411469 - 14411424
Alignment:
Q  1 actgctaaggggtatttgggtaatttacttgtgtttctcagccaaa 46  Q
    ||||| |||||| ||||| |||||||||| ||||||||||||||||    
T  14411469 actgccaaggggcatttgagtaatttactcgtgtttctcagccaaa 14411424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 48900853 - 48900820
Alignment:
Q  12 gtatttgggtaatttacttgtgtttctcagccaa 45  Q
    |||||||||||| |||||||||||||||||||||    
T  48900853 gtatttgggtaaattacttgtgtttctcagccaa 48900820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 603769 - 603713
Alignment:
Q  14 atttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||| |||| |||||| ||||  | |||||||||||||| |||||||||||||||||    
T  603769 attttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctc 603713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 30791087 - 30791143
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaat 66  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| |||||||||||||    
T  30791087 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaat 30791143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 31324883 - 31324943
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    |||||||||||| ||||||| ||||||||||| ||||| |||| ||  |||| ||||||||    
T  31324883 gggtatttgggttatttactcgtgtttctcagtcaaaccacatgtgtcaacaacaattctc 31324943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 13388795 - 13388841
Alignment:
Q  24 tttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||    
T  13388795 tttacttgtgtttctcagccaaacaacaagtgggaacagcaattctc 13388841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 9391214 - 9391252
Alignment:
Q  9 ggggtatttgggtaatttacttgtgtttctcagccaaac 47  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  9391214 ggggtatttgggtaaattactagtgtttctcagccaaac 9391252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 27641828 - 27641890
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctc 70  Q
    ||||| |||| |||| |||||| ||||  | |||||||||||||| |||||||||||||||||    
T  27641828 aggggcattttggtattttactagtgtggcacagccaaacaacatgtgggaacagcaattctc 27641890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 30826015 - 30825983
Alignment:
Q  39 cagccaaacaacatttgggaacagcaattctca 71  Q
    |||||||||||||| ||||||||||||||||||    
T  30826015 cagccaaacaacatgtgggaacagcaattctca 30825983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 27992 - 28036
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacat 52  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  27992 aggggtatttgggtaatttactcgtgtttctcagccaaactacat 28036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 35555248 - 35555314
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaaa 74  Q
    |||||||||| |||| |||||||||||||||||||| ||||| || ||  |||| ||||||||||||    
T  35555248 aggggtattttggtattttacttgtgtttctcagcctaacaagatgtgtcaacaacaattctcaaaa 35555314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 2335224 - 2335289
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaa 73  Q
    ||||| ||||| |||||||||| ||||  | |||||||||||||| |||||||| |||||||||||    
T  2335224 aggggcatttgagtaatttactcgtgtggcacagccaaacaacatgtgggaacaacaattctcaaa 2335289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 44934560 - 44934625
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaa 73  Q
    |||||||||||||||| ||||| |||||||||||||||| |  || ||  ||||||||||||||||    
T  44934560 aggggtatttgggtaaattactagtgtttctcagccaaagataatgtgttaacagcaattctcaaa 44934625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 7344636 - 7344700
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaattctcaaaa 74  Q
    |||||||| |||| |||||| ||||  | |||||||||||||| ||||||||||||| |||||||    
T  7344636 gggtattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaatactcaaaa 7344700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 22014211 - 22014178
Alignment:
Q  39 cagccaaacaacatttgggaacagcaattctcaa 72  Q
    |||||||||||||| |||||||||||||||||||    
T  22014211 cagccaaacaacatgtgggaacagcaattctcaa 22014178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 31745177 - 31745140
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaac 47  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  31745177 gggtatttgggtaaattactcgtgtttctcagccaaac 31745140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 34798884 - 34798921
Alignment:
Q  8 aggggtatttgggtaatttacttgtgtttctcagccaa 45  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  34798884 aggggcatttgggtaaattacttgtgtttctcagccaa 34798921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 40740898 - 40740845
Alignment:
Q  13 tatttgggtaatttacttgtgtttctcagccaaacaacatttgggaacagcaat 66  Q
    ||||||||||| ||||| ||||||||||||||||| | || || ||||||||||    
T  40740898 tatttgggtaaattactcgtgtttctcagccaaaccaaatgtgtgaacagcaat 40740845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 37651814 - 37651774
Alignment:
Q  7 aaggggtatttgggtaatttacttgtgtttctcagccaaac 47  Q
    |||||| ||||| |||||||||| |||||||||||||||||    
T  37651814 aaggggcatttgagtaatttactcgtgtttctcagccaaac 37651774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 41472092 - 41472128
Alignment:
Q  10 gggtatttgggtaatttacttgtgtttctcagccaaa 46  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  41472092 gggtatttgggtaaattactcgtgtttctcagccaaa 41472128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University