View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13889_low_2 (Length: 391)
Name: NF13889_low_2
Description: NF13889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13889_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 32297440 - 32297084
Alignment:
| Q |
19 |
taagaaattttccaattacaaacaataaatgatctcggttggacgactcaatttacacaacaataaaaccaatgcacaacaatctcaaccgttaatcaga |
118 |
Q |
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| T |
32297440 |
taagaaattttccaattacaaacaataaatgatctcggttggacgattca-tttacacaacaataaaaccaatgtacaacaatctcaaccgttaatcaga |
32297342 |
T |
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| Q |
119 |
aatcaaacgtcgagccgttacgacaaatttcccttatgaacaagttatacaaaggtttgattagattattgtacatgttttacaactcaaagccggttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32297341 |
gatcaaacgtcgagccgttacgacaaatttcccttatgaacaagttatacaaaggtttgattagattattgtatatgttttacaactcaaagccggttgt |
32297242 |
T |
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| Q |
219 |
cagtgggccctaagcaggtaatcaatgggaccaggtgccacaaaatggtctttgtatctttgttggtgtaatgaatttatgtgatgtaagtgtatttagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32297241 |
cagtgggccctaagcaggtaatcaatgggaccaggtaccacaaaatggtctttgtatctttgttggtgtaatgaatttatgtgatgtaagtgtatttagt |
32297142 |
T |
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| Q |
319 |
agaataatattaatcgtaccttatatgaaaagtataatctacatatacctttcttgat |
376 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32297141 |
agaataataataatcgtaccttatatgaaaagtataatctacatatacctttcttgat |
32297084 |
T |
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