View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13889_low_3 (Length: 386)
Name: NF13889_low_3
Description: NF13889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13889_low_3 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 89 - 373
Target Start/End: Complemental strand, 29953311 - 29953027
Alignment:
| Q |
89 |
tgtataatggagagttgctgcaataagatttgctattttatgtttacctcttttcttttcttcagcattttactataataagatatcagtctatnnnnnn |
188 |
Q |
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| T |
29953311 |
tgtataatggagagttgctgcaataagatttgctattttatgtttacctcttttcttttcttcagcattttactataataaggtatcagtctataaaaaa |
29953212 |
T |
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| Q |
189 |
nnnnnnnnttatcttatgaatgtaataatgataagctgaaccatttaacaacggtgtcattcttttgattcacccaaatatgattcgaaatggatgaatt |
288 |
Q |
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| T |
29953211 |
acaaaaaattatcttgtgaatgtaataatgataagctgaaccatttaacaacagtgtcattcttttgattcacccaaatatgattcgaaatggatgaatt |
29953112 |
T |
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| Q |
289 |
ttgctagttgcaaagtttgtcctagtctatatgaagagattaaatctctaacaagcgtaaagtagaacgatcctccaatgttccc |
373 |
Q |
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| T |
29953111 |
ttgctagttgtaaagtttgtcatagtctatatgaagagattaaatctgtaacacgcgtaaattagaacgatcctccaaagttccc |
29953027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 6165180 - 6165121
Alignment:
| Q |
280 |
ggatgaattttgctagttgcaaagtttgtcctagtctatatgaagagattaaatctctaa |
339 |
Q |
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| T |
6165180 |
ggatgaattttgctagttgtgaagtttgtcctactctacatgaagagatcaaatctctaa |
6165121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 9649503 - 9649421
Alignment:
| Q |
259 |
cacccaaatatgattcgaaatggatgaattttgctagttgcaaagtttgtcctagtctatatgaagagattaaatctctaaca |
341 |
Q |
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| T |
9649503 |
cacctaaatatgattcaaattggatgaattttgttagttgcgaaacttgtcataatttacatgaagagattaagtctctaaca |
9649421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 184383 - 184331
Alignment:
| Q |
279 |
tggatgaattttgctagttgcaaagtttgtcctagtctatatgaagagattaa |
331 |
Q |
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| T |
184383 |
tggatgagttttgctagttatgaagtttgtcctagtctatatgaagagattaa |
184331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 366
Target Start/End: Original strand, 8991188 - 8991296
Alignment:
| Q |
256 |
attcacccaaatatgattcgaaatggatgaattttgctagttgcaaagtttgtcctagtctatatgaagagattaaatctctaacaagcgtaaagtagaa |
355 |
Q |
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| T |
8991188 |
attcacccaagtatgattcaaattggattgattttgcaagttgtgaaacttgtcatagtttacaagaagagattaaatctctaaca--cgtaaactagaa |
8991285 |
T |
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| Q |
356 |
cgatcctccaa |
366 |
Q |
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| T |
8991286 |
caagcctccaa |
8991296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 30988477 - 30988399
Alignment:
| Q |
263 |
caaatatgattcgaaatggatgaattttgctagttgcaaagtttgtcctagtctatatgaagagattaaatctctaaca |
341 |
Q |
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| T |
30988477 |
caaatatgattcaaattggatggatttagcaagttgtgaaacttgtcctagtttacacgaagagattaaatctctaaca |
30988399 |
T |
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