View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13889_low_4 (Length: 374)

Name: NF13889_low_4
Description: NF13889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13889_low_4
NF13889_low_4
[»] chr5 (32 HSPs)
chr5 (222-332)||(31486808-31486918)
chr5 (222-332)||(31487057-31487166)
chr5 (222-332)||(26523132-26523242)
chr5 (222-332)||(43394926-43395036)
chr5 (227-332)||(16528628-16528733)
chr5 (222-332)||(7127582-7127692)
chr5 (222-332)||(12442125-12442235)
chr5 (222-332)||(16528804-16528914)
chr5 (222-332)||(11314002-11314113)
chr5 (222-331)||(35159727-35159835)
chr5 (222-299)||(11313825-11313902)
chr5 (222-299)||(16529158-16529235)
chr5 (222-332)||(24350891-24351001)
chr5 (222-332)||(24351444-24351554)
chr5 (227-299)||(11313668-11313740)
chr5 (241-299)||(16305388-16305446)
chr5 (222-282)||(24326548-24326608)
chr5 (222-282)||(24350733-24350793)
chr5 (222-282)||(24351287-24351347)
chr5 (222-297)||(16526221-16526296)
chr5 (222-299)||(7673224-7673302)
chr5 (222-332)||(16528982-16529090)
chr5 (222-292)||(26523268-26523338)
chr5 (225-278)||(3432939-3432992)
chr5 (222-332)||(19121930-19122040)
chr5 (222-299)||(19122266-19122343)
chr5 (231-299)||(7779476-7779544)
chr5 (222-294)||(41093080-41093152)
chr5 (228-332)||(43395101-43395207)
chr5 (222-299)||(9488075-9488152)
chr5 (222-299)||(23138055-23138131)
chr5 (222-294)||(41092901-41092972)
[»] chr2 (29 HSPs)
chr2 (222-334)||(3249770-3249882)
chr2 (222-326)||(3249561-3249665)
chr2 (222-332)||(28612206-28612316)
chr2 (223-334)||(11736325-11736436)
chr2 (222-332)||(28611781-28611891)
chr2 (227-328)||(5001676-5001777)
chr2 (29-75)||(9173197-9173243)
chr2 (222-332)||(10129470-10129580)
chr2 (222-299)||(11735932-11736009)
chr2 (222-299)||(12898046-12898123)
chr2 (227-332)||(41995726-41995831)
chr2 (222-332)||(5001494-5001604)
chr2 (222-332)||(28612630-28612739)
chr2 (222-293)||(5013208-5013279)
chr2 (222-326)||(6348095-6348199)
chr2 (138-206)||(9173306-9173374)
chr2 (222-331)||(28612842-28612952)
chr2 (222-332)||(44256496-44256606)
chr2 (227-297)||(12896434-12896504)
chr2 (242-332)||(6347936-6348025)
chr2 (222-299)||(11131263-11131340)
chr2 (222-332)||(37131461-37131570)
chr2 (222-290)||(627560-627628)
chr2 (227-299)||(44543721-44543793)
chr2 (313-352)||(3249469-3249508)
chr2 (309-356)||(3249680-3249727)
chr2 (222-299)||(15256568-15256645)
chr2 (222-287)||(28612039-28612104)
chr2 (222-299)||(29550156-29550237)
[»] chr8 (41 HSPs)
chr8 (222-332)||(33198856-33198965)
chr8 (222-332)||(2084899-2085010)
chr8 (225-332)||(27853643-27853750)
chr8 (222-332)||(3459108-3459218)
chr8 (222-299)||(23828133-23828210)
chr8 (222-332)||(44433652-44433762)
chr8 (227-332)||(38111372-38111477)
chr8 (220-333)||(40399466-40399579)
chr8 (231-299)||(44429082-44429150)
chr8 (225-299)||(604508-604583)
chr8 (222-332)||(23085883-23085994)
chr8 (222-299)||(1197901-1197978)
chr8 (222-299)||(23830951-23831028)
chr8 (222-299)||(32062840-32062917)
chr8 (222-299)||(39922094-39922171)
chr8 (222-332)||(44429917-44430027)
chr8 (220-332)||(29580012-29580123)
chr8 (222-288)||(44434176-44434242)
chr8 (235-332)||(604820-604918)
chr8 (222-299)||(37410078-37410155)
chr8 (222-331)||(23960774-23960882)
chr8 (221-288)||(44429419-44429485)
chr8 (222-299)||(23838348-23838426)
chr8 (225-299)||(35617708-35617782)
chr8 (222-332)||(44430441-44430552)
chr8 (250-299)||(33198652-33198701)
chr8 (222-332)||(37198271-37198381)
chr8 (222-291)||(44429247-44429316)
chr8 (225-288)||(604344-604408)
chr8 (227-299)||(34947504-34947576)
chr8 (222-334)||(44433825-44433938)
chr8 (222-268)||(23838173-23838219)
chr8 (222-299)||(37198119-37198197)
chr8 (222-288)||(44430613-44430678)
chr8 (222-332)||(44433999-44434110)
chr8 (222-330)||(44430090-44430199)
chr8 (253-299)||(604682-604728)
chr8 (222-332)||(44430264-44430375)
chr8 (222-295)||(13461837-13461910)
chr8 (309-338)||(44014831-44014860)
chr8 (222-294)||(13797465-13797537)
[»] chr4 (43 HSPs)
chr4 (220-299)||(47428421-47428500)
chr4 (222-332)||(54653622-54653732)
chr4 (222-327)||(48076213-48076318)
chr4 (225-332)||(36639198-36639305)
chr4 (222-299)||(44500695-44500772)
chr4 (222-332)||(48076391-48076501)
chr4 (222-332)||(2481624-2481731)
chr4 (228-332)||(4941707-4941811)
chr4 (225-299)||(8079044-8079119)
chr4 (220-299)||(12796126-12796205)
chr4 (222-332)||(23952478-23952587)
chr4 (222-299)||(28389777-28389854)
chr4 (222-299)||(53144851-53144928)
chr4 (222-294)||(22292921-22292993)
chr4 (220-332)||(7821324-7821436)
chr4 (222-326)||(43161719-43161823)
chr4 (228-332)||(52689591-52689695)
chr4 (222-332)||(2177287-2177397)
chr4 (222-299)||(7526450-7526527)
chr4 (222-332)||(8118620-8118730)
chr4 (222-299)||(23952786-23952863)
chr4 (222-299)||(24049588-24049665)
chr4 (222-299)||(47768975-47769052)
chr4 (222-299)||(48076568-48076645)
chr4 (228-299)||(22292720-22292791)
chr4 (230-299)||(21581282-21581351)
chr4 (222-299)||(28379768-28379844)
chr4 (222-299)||(29967202-29967279)
chr4 (222-299)||(36639368-36639445)
chr4 (225-299)||(8078918-8078994)
chr4 (222-293)||(7796808-7796879)
chr4 (256-299)||(9711315-9711358)
chr4 (225-332)||(7821545-7821652)
chr4 (224-297)||(43161933-43162006)
chr4 (222-269)||(15456315-15456362)
chr4 (222-269)||(15463699-15463746)
chr4 (222-257)||(24046088-24046123)
chr4 (222-296)||(28379981-28380054)
chr4 (309-338)||(8079232-8079261)
chr4 (222-299)||(8118405-8118481)
chr4 (222-299)||(8397748-8397825)
chr4 (231-299)||(8079327-8079395)
chr4 (259-291)||(10466612-10466644)
[»] chr1 (30 HSPs)
chr1 (227-331)||(43761975-43762079)
chr1 (222-332)||(1156038-1156148)
chr1 (222-332)||(44263112-44263222)
chr1 (222-332)||(318578-318688)
chr1 (222-332)||(42492137-42492248)
chr1 (225-299)||(51114116-51114190)
chr1 (222-332)||(38684038-38684148)
chr1 (222-332)||(51113929-51114039)
chr1 (222-299)||(5428551-5428628)
chr1 (222-328)||(27296360-27296466)
chr1 (222-299)||(42496939-42497016)
chr1 (222-299)||(42497297-42497374)
chr1 (225-332)||(16165658-16165766)
chr1 (228-299)||(21617785-21617856)
chr1 (222-332)||(51113746-51113857)
chr1 (222-299)||(5428956-5429033)
chr1 (222-299)||(44262687-44262764)
chr1 (227-299)||(6537661-6537733)
chr1 (225-332)||(52740726-52740834)
chr1 (222-331)||(5429071-5429184)
chr1 (222-299)||(3227229-3227305)
chr1 (222-299)||(27296185-27296262)
chr1 (224-287)||(28950277-28950340)
chr1 (227-298)||(51272499-51272570)
chr1 (222-298)||(44263333-44263409)
chr1 (222-334)||(1647566-1647678)
chr1 (222-269)||(18912350-18912397)
chr1 (222-269)||(28950023-28950070)
chr1 (228-299)||(44099676-44099747)
chr1 (225-290)||(33375656-33375721)
[»] chr7 (47 HSPs)
chr7 (222-332)||(16671628-16671738)
chr7 (222-332)||(17645996-17646106)
chr7 (222-332)||(23591386-23591496)
chr7 (222-330)||(4454947-4455055)
chr7 (222-299)||(4680901-4680978)
chr7 (222-299)||(11650013-11650090)
chr7 (222-332)||(12140833-12140943)
chr7 (222-299)||(18486657-18486734)
chr7 (222-334)||(4681114-4681227)
chr7 (228-332)||(18487180-18487284)
chr7 (224-332)||(27716503-27716611)
chr7 (225-299)||(27716314-27716388)
chr7 (222-332)||(48640772-48640883)
chr7 (222-299)||(2354670-2354747)
chr7 (222-299)||(9141966-9142043)
chr7 (231-299)||(43059223-43059291)
chr7 (222-332)||(2526925-2527036)
chr7 (222-299)||(4455390-4455467)
chr7 (222-332)||(11646369-11646479)
chr7 (222-332)||(21224161-21224271)
chr7 (222-334)||(45419606-45419718)
chr7 (222-341)||(23591594-23591713)
chr7 (222-332)||(22324307-22324417)
chr7 (222-299)||(22773916-22773992)
chr7 (222-283)||(32278157-32278218)
chr7 (222-332)||(35124748-35124858)
chr7 (222-293)||(11645942-11646013)
chr7 (222-269)||(11646650-11646697)
chr7 (220-298)||(16362696-16362774)
chr7 (222-299)||(16671269-16671346)
chr7 (222-299)||(17645637-17645714)
chr7 (222-299)||(19222128-19222206)
chr7 (222-299)||(34837210-34837288)
chr7 (228-289)||(9142148-9142209)
chr7 (222-295)||(11646218-11646291)
chr7 (222-299)||(16377432-16377509)
chr7 (242-332)||(45419814-45419904)
chr7 (225-327)||(48640993-48641095)
chr7 (256-299)||(16376489-16376532)
chr7 (222-293)||(38694821-38694892)
chr7 (222-293)||(40450112-40450183)
chr7 (227-265)||(23591238-23591276)
chr7 (222-299)||(30991482-30991560)
chr7 (222-299)||(16492550-16492626)
chr7 (222-295)||(21128063-21128136)
chr7 (242-299)||(46264288-46264345)
chr7 (222-299)||(48641447-48641523)
[»] chr6 (29 HSPs)
chr6 (222-332)||(9828942-9829052)
chr6 (222-299)||(23902530-23902607)
chr6 (225-299)||(17200012-17200086)
chr6 (222-332)||(25068211-25068322)
chr6 (222-299)||(4811068-4811145)
chr6 (222-299)||(17202873-17202950)
chr6 (222-299)||(17906806-17906883)
chr6 (222-332)||(25067985-25068095)
chr6 (222-273)||(17011132-17011183)
chr6 (222-299)||(17080058-17080135)
chr6 (222-299)||(27579621-27579698)
chr6 (237-287)||(8685186-8685236)
chr6 (230-299)||(17202661-17202731)
chr6 (222-332)||(23610455-23610565)
chr6 (222-332)||(17201620-17201730)
chr6 (222-329)||(808495-808601)
chr6 (222-299)||(808852-808930)
chr6 (237-287)||(8674507-8674557)
chr6 (222-299)||(17200347-17200424)
chr6 (228-293)||(23622247-23622312)
chr6 (222-299)||(24223530-24223607)
chr6 (256-299)||(17200468-17200511)
chr6 (222-265)||(29201581-29201624)
chr6 (222-326)||(4100293-4100401)
chr6 (222-296)||(24223166-24223240)
chr6 (222-299)||(32208413-32208490)
chr6 (309-338)||(17080361-17080390)
chr6 (222-291)||(17203678-17203747)
chr6 (222-299)||(27315310-27315386)
[»] chr3 (34 HSPs)
chr3 (222-299)||(11454586-11454663)
chr3 (222-332)||(40050873-40050982)
chr3 (222-332)||(46451493-46451603)
chr3 (222-332)||(47503026-47503136)
chr3 (220-299)||(36643133-36643212)
chr3 (235-297)||(52300747-52300809)
chr3 (222-332)||(837176-837286)
chr3 (222-299)||(11220800-11220876)
chr3 (222-299)||(18094979-18095056)
chr3 (222-287)||(43819351-43819416)
chr3 (222-293)||(38887377-38887448)
chr3 (222-299)||(43017294-43017371)
chr3 (228-299)||(16015256-16015327)
chr3 (253-299)||(21969013-21969059)
chr3 (253-299)||(21991449-21991495)
chr3 (222-332)||(20877189-20877299)
chr3 (242-332)||(47503199-47503289)
chr3 (222-298)||(37760520-37760596)
chr3 (222-332)||(38887551-38887663)
chr3 (222-297)||(18094764-18094839)
chr3 (222-293)||(53047599-53047670)
chr3 (222-332)||(35560124-35560235)
chr3 (222-332)||(11454228-11454338)
chr3 (222-262)||(3847848-3847888)
chr3 (223-299)||(17755760-17755836)
chr3 (223-299)||(19057080-19057156)
chr3 (222-294)||(38887806-38887878)
chr3 (228-299)||(24365763-24365834)
chr3 (222-265)||(47519894-47519937)
chr3 (228-299)||(47519955-47520026)
chr3 (222-299)||(25917446-25917523)
chr3 (229-293)||(51654074-51654138)
chr3 (222-299)||(9240813-9240890)
chr3 (262-299)||(25937792-25937829)
[»] scaffold0001 (1 HSPs)
scaffold0001 (224-332)||(196672-196781)
[»] scaffold0018 (1 HSPs)
scaffold0018 (222-332)||(163775-163885)
[»] scaffold0013 (1 HSPs)
scaffold0013 (234-332)||(102738-102836)
[»] scaffold1155 (1 HSPs)
scaffold1155 (231-291)||(958-1018)
[»] scaffold0345 (1 HSPs)
scaffold0345 (231-291)||(9199-9259)
[»] scaffold0105 (1 HSPs)
scaffold0105 (231-291)||(29721-29781)
[»] scaffold0294 (1 HSPs)
scaffold0294 (222-291)||(12399-12468)
[»] scaffold0240 (1 HSPs)
scaffold0240 (222-299)||(13115-13192)
[»] scaffold0504 (1 HSPs)
scaffold0504 (222-299)||(1539-1617)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 31486918 - 31486808
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||       | |||||||||||||    
T  31486918 tgcaacaatttaacctaatattttcccgttcatttgctgtattaggttaacagtaatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 31486819  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  31486818 tcattcctatc 31486808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 31487166 - 31487057
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||       | |||||||||||||    
T  31487166 tgcagtaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaacctaacaaatttcatct-aaaaaatgcatcgcaccaatt 31487068  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  31487067 tcattcctatc 31487057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 26523242 - 26523132
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||| ||||||||||||||||||       | |||||||||||||    
T  26523242 tgcatcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttgatctaacaaattccatctaaaaaaatgcatcgcaccaatt 26523143  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  26523142 tcattcctatc 26523132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 43395036 - 43394926
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  43395036 tgcagcaatttaacctaattttttcctgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 43394937  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  43394936 tcattcctatc 43394926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 16528628 - 16528733
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcatt 326  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| ||| | |||||| ||||||||||| ||||       | ||||||||||||||||||    
T  16528628 caatttaacctaacattttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattctatctaaaaaaatgcatcgcaccaatttcatt 16528727  T
Q  327 cctatc 332  Q
    ||||||    
T  16528728 cctatc 16528733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 7127582 - 7127692
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||| |||||||||||  |||||||| ||| | |||||| ||||||||||||||||       |  ||||||||||||    
T  7127582 tgcagcaatttaacctaattttttcctgctcatttgcttgattaggtttgcaattatttaaactaacaaattccatctaaaaaaatgtatcgcaccaatt 7127681  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  7127682 tcattcctatc 7127692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 12442235 - 12442125
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  12442235 tgcagcaatttaacctaattttttcccgctcatttgccttattaggtttgcaattatttaacctaacaaattacatctacaaaaatgcatcgcaccaatt 12442136  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  12442135 tcattcatatc 12442125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 16528804 - 16528914
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||| |||   |||||| ||||||| ||||||||       | |||||||||||||    
T  16528804 tgcagcaatttaacctaattttttcccgctcatttgccttattaggtttgcaaatatttaacctaacaacttccatctaaaaaaattcatcgcaccaatt 16528903  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  16528904 tcattcctatc 16528914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 11314002 - 11314113
Alignment:
Q  222 tgcagcaatttaacctaatattttc-ccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaat 320  Q
    ||||||||||||||||||| ||||  ||||||||||||| ||||||||| ||| | |||||| |||| |||||||||||       | ||||||||||||    
T  11314002 tgcagcaatttaacctaattttttttccgctcatttgctttattaggtttgcaattatttaacctaaaaaattccatctaaaaaaatgcatcgcaccaat 11314101  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  11314102 ttcattcctatc 11314113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 35159727 - 35159835
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||  ||||       | |||||||||||||    
T  35159727 tgcagcaatttaacctatt-ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattttatctaaaaaaatgcatcgcaccaatt 35159825  T
Q  322 tcattcctat 331  Q
    ||||||||||    
T  35159826 tcattcctat 35159835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 11313825 - 11313902
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| ||||||||| ||||| || ||||||||| ||| | |||||| ||||||||||||||||    
T  11313825 tgcaacaatttaacctaattttttcccgcacattttctttattaggtttgcaattatttaacctaacaaattccatct 11313902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 16529158 - 16529235
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||| || ||| | ||||||  |||||||||||||||    
T  16529158 tgcagcaatttaacctaattttttcgcgctcatttgctttattagatttgcaattatttaacgtaacaaattccatct 16529235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 24351001 - 24350891
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||| |||||||||||||  ||||||||||||||| | ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  24351001 tgcagtaatttaacctaattatttcccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 24350902  T
Q  322 tcattcctatc 332  Q
    ||||| |||||    
T  24350901 tcattactatc 24350891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 24351554 - 24351444
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||| |||||||||||||  ||||||||||||||| | ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  24351554 tgcagtaatttaacctaattatttcccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 24351455  T
Q  322 tcattcctatc 332  Q
    ||||| |||||    
T  24351454 tcattactatc 24351444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 11313668 - 11313740
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||| ||||||||||||||| || ||||||||| ||| | |||||| ||||||||||| ||||    
T  11313668 caatttaacctaattttttcccgctcattttctttattaggtttgcaattatttaacctaacaaattctatct 11313740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 16305388 - 16305446
Alignment:
Q  241 attttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| ||||||||| ||| | ||||||||||| |||||||||||    
T  16305388 attttcccgctcatttgctttattaggtttgcaattatttaatctaataaattccatct 16305446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 24326548 - 24326608
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaa 282  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||| | ||||||    
T  24326548 tgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaa 24326608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 24350793 - 24350733
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaa 282  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||| | ||||||    
T  24350793 tgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaa 24350733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 24351347 - 24351287
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaa 282  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||| | ||||||    
T  24351347 tgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaa 24351287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 16526221 - 16526296
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccat 297  Q
    |||| |||||||||||||| ||||  | |||||||||| ||||||||| ||| | |||||| ||||||||||||||    
T  16526221 tgcatcaatttaacctaattttttttcactcatttgctttattaggtttgcaattatttaacctaacaaattccat 16526296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 7673302 - 7673224
Alignment:
Q  222 tgcagcaatttaacctaa-tattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||| | |||||||| ||||||| | ||||||||| ||| | |||||| |||||||||| |||||    
T  7673302 tgcagcaatttaacctaatttttttcccgttcatttgttttattaggtttgcaattatttaacctaacaaatttcatct 7673224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 16528982 - 16529090
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||||||||||||  ||||||| ||||||||||  ||||||||| ||| | |||||| ||||||||||  ||||       | |||||||||||||    
T  16528982 tgcagcaatttaaccta--attttcctgctcatttgccttattaggtttgcaattatttaacctaacaaatttaatctaaaaaaattcatcgcaccaatt 16529079  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  16529080 tcattcatatc 16529090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 26523338 - 26523268
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaat 292  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||||| ||| | |||| | |||||||||    
T  26523338 tgcatcaatttaacctaattttttcccgcttatttgctttattaggtttgcaattatttgacctaacaaat 26523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 3432939 - 3432992
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaat 278  Q
    |||||||||| ||||||||||||| || ||||  ||||||||||||||||||||    
T  3432939 agcaatttaatctaatattttccctctaattttttgtattaggttagcagtaat 3432992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 19121930 - 19122040
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||| |  |||||||||| ||||||||| ||| |  ||||| ||||||||||| ||||       | |||||||||||||    
T  19121930 tgcatcaatttaacctaatttttttcaactcatttgctttattaggtttgcaattgtttaacctaacaaattctatctaaaaaaatgcatcgcaccaatt 19122029  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  19122030 tcattcatatc 19122040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 19122266 - 19122343
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||| || |||||||||| ||||||||| ||| |  ||||| ||||||||||| ||||    
T  19122266 tgcatcaatttaacctaatttttttccactcatttgctttattaggtttgcaattgtttaacctaacaaattctatct 19122343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 7779476 - 7779544
Alignment:
Q  231 ttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||| |||||| || |  ||||| ||||||||||||| ||||||| || |||||||||||||    
T  7779476 ttaacctaataatttccctctaaaatgctgcattaggttagcagcaatttaacctgacaaattccatct 7779544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 41093152 - 41093080
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattc 294  Q
    |||| |||||||||||||| | |||| ||| ||||||| ||||||||| ||| | |||||| |||||||||||    
T  41093152 tgcatcaatttaacctaatttattcctgctgatttgctttattaggtttgcaattatttaacctaacaaattc 41093080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 43395207 - 43395101
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnnta--catcgcaccaatttcat 325  Q
    |||||||| | || |||||||||||||||||| |||||||||  || | |||||| |||||||||| ||| |       ||  |||||||||||||||||    
T  43395207 aatttaacttgattttttcccgctcatttgctttattaggtttccaattatttaacctaacaaattacatgtaaaaaaatatgcatcgcaccaatttcat 43395108  T
Q  326 tcctatc 332  Q
    |||||||    
T  43395107 tcctatc 43395101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 9488152 - 9488075
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||| ||| | ||||||| |||||| || ||| | |||||| |||||||||| |||||    
T  9488152 tgcaacaatttaacctaatttttttccgtttatttgctttattagatttgcaattatttaacctaacaaatttcatct 9488075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 23138055 - 23138131
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||| ||||||||||| |||||| ||||||||||| ||||||||| ||| | || |||  |||||| ||||||||    
T  23138055 tgcagcattttaacctaattttttcc-gctcatttgctttattaggtttgcaattatataacgtaacaagttccatct 23138131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 41092972 - 41092901
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattc 294  Q
    |||| |||||||||||||| | |||| |||| |||||| ||||||||| ||| | |||||| |||||||||||    
T  41092972 tgcatcaatttaacctaatttattcc-gctcttttgctttattaggtttgcaattatttaacctaacaaattc 41092901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 3249882 - 3249770
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||       | |||||||||||||    
T  3249882 tgcaacaatttaacctaatatttttccgcttatttgctgtattaggttagcagtaatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 3249783  T
Q  322 tcattcctatcat 334  Q
    |||||||||||||    
T  3249782 tcattcctatcat 3249770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 3249665 - 3249561
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| || |||||       |||||||||||||||    
T  3249665 tgcagcaatttaagctaatattttcccgctcatttgctatattaggttaacagtaatttaacctaacaattttcatctaaaaaaatacatcgcaccaatt 3249566  T
Q  322 tcatt 326  Q
    |||||    
T  3249565 tcatt 3249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 28612316 - 28612206
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  28612316 tgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 28612217  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  28612216 tcattcctatc 28612206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 11736325 - 11736436
Alignment:
Q  223 gcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaattt 322  Q
    |||||||||||||||||||||||||||||||||||||  || ||||| ||| | |||||| |||||||||| |||||       | ||||||||||||||    
T  11736325 gcagcaatttaacctaatattttcccgctcatttgcttcataaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaattt 11736424  T
Q  323 cattcctatcat 334  Q
    |||| |||||||    
T  11736425 catttctatcat 11736436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 28611891 - 28611781
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||||| ||| | |||||| ||||||| ||||||||       | ||||||||||||     
T  28611891 tgcagcaatttaacctaattttttcccgctcatttgcttgattaggtttgcaattatttaacctaacaagttccatctaaaaaaatgcatcgcaccaata 28611792  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  28611791 tcattcctatc 28611781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 5001777 - 5001676
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcatt 326  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||       | ||||||||||||||||||    
T  5001777 caatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatttcatt 5001678  T
Q  327 cc 328  Q
    ||    
T  5001677 cc 5001676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 9173197 - 9173243
Alignment:
Q  29 ccaacaaccacactatattcaaaccatgattgaattaacaaatgctc 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9173197 ccaacaaccacactatattcaaaccatgattgaattaacaaatgctc 9173243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 10129580 - 10129470
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| | ||| |||||||||||| ||||||||| ||| | |||||| |||| |||||| ||||       | |||||||||||||    
T  10129580 tgcagcaatttaacctaatttgttctcgctcatttgctttattaggtttgcaattatttaacctaataaattctatctaaaaaaattcatcgcaccaatt 10129481  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  10129480 tcattcctatc 10129470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 11735932 - 11736009
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||| ||| | |||||| |||||||||| |||||    
T  11735932 tgcagcaatttaacctaatattttcccgctcatttgcttcataaggtttgcaattatttaacctaacaaatttcatct 11736009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 12898046 - 12898123
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||| ||||||| |||||||||| || | ||||||| ||| | |||||||||||||||||||||||    
T  12898046 tgcagcaatttaacctgatatttttccgctcatttactttgttaggtttgcaattatttaatctaacaaattccatct 12898123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 332
Target Start/End: Complemental strand, 41995831 - 41995726
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcatt 326  Q
    |||||||||||||| |||||| | ||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||| |||||||||    
T  41995831 caatttaacctaattttttcctgttcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaacatgcatcgcacgaatttcatt 41995732  T
Q  327 cctatc 332  Q
    ||||||    
T  41995731 cctatc 41995726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 5001604 - 5001494
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||| ||||| ||||| || ||||||||| |||||||||| |||| |||||| |||| ||||| |||||       | |||||||||||||    
T  5001604 tgcagcaatttaaactaattttttctcgttcatttgctttattaggttaacagttatttaacctaaaaaatttcatctaaaaaaatgcatcgcaccaatt 5001505  T
Q  322 tcattcctatc 332  Q
    | |||||||||    
T  5001504 taattcctatc 5001494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 28612739 - 28612630
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||||||||||| ||||| ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  28612739 tgcaacaatttaacctaatcttttcccgctca-ttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 28612641  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  28612640 tcattcatatc 28612630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 5013279 - 5013208
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||  || | ||||||| |||||||||    
T  5013279 tgcagcaatttaacctaaatttttcccgctcatttgctttattaggtttacaattatttaatttaacaaatt 5013208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 326
Target Start/End: Original strand, 6348095 - 6348199
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||||||||| |||| ||||| |||||| ||||| ||||||||| ||| | ||||||| ||||||||| |||||       | |||||||||||||    
T  6348095 tgcagcaatttaacataattttttctcgctcaattgctttattaggtttgcaattatttaatttaacaaatttcatctaaaaaaatgcatcgcaccaatt 6348194  T
Q  322 tcatt 326  Q
    |||||    
T  6348195 tcatt 6348199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 9173306 - 9173374
Alignment:
Q  138 ctactttctttaaattattcgaccaaactcacaaattaaacannnnnnnactcaaataaacttctaact 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||| ||||    
T  9173306 ctactttctttaaattagtcgaccaaactcacaaattaaacatttttttactcaaataaacttcaaact 9173374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 28612952 - 28612842
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttag-cagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaat 320  Q
    |||| |||||||||||||| ||||| || ||||||| | |||||||||   || | |||||||||||||||||||||||       | ||||||||||||    
T  28612952 tgcaacaatttaacctaattttttctcgttcatttgttttattaggtttttcaattatttaatctaacaaattccatctaaaataatgcatcgcaccaat 28612853  T
Q  321 ttcattcctat 331  Q
    |||||||||||    
T  28612852 ttcattcctat 28612842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 44256496 - 44256606
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||  ||   |||||| |||| ||||| |||||       | |||||||||||||    
T  44256496 tgcagcaatttaacctaattttttcccgctcattttctttattaggttttcaagtatttaacctaataaatttcatctaaaaaaatgcatcgcaccaatt 44256595  T
Q  322 tcattcctatc 332  Q
    ||||| |||||    
T  44256596 tcatttctatc 44256606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 12896504 - 12896434
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccat 297  Q
    ||||||||| |||| |||| ||||||||||| | ||||||||| ||| | ||||||||||| |||||||||    
T  12896504 caatttaacttaatctttttccgctcatttgttttattaggtttgcaattatttaatctaataaattccat 12896434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 6347936 - 6348025
Alignment:
Q  242 ttttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcattcctatc 332  Q
    |||||||||||||||||| |||||| ||| || | |||||| |||||||||| |||||       || |||||||||||||||||||||||    
T  6347936 ttttcccgctcatttgctttattagttta-caattatttaacctaacaaatttcatctaaaaaattatatcgcaccaatttcattcctatc 6348025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 11131263 - 11131340
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||| ||||| ||||| |||||| || |  ||||| ||||||||||||| ||||||| |||||||||| |||||    
T  11131263 tgcagcaacttaacttaataatttccctctaaaatgctgcattaggttagcagcaatttaacctaacaaatttcatct 11131340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 37131570 - 37131461
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||| || |||||||||| ||||| ||| ||| | ||||||  ||||||||| |||||       | |||| ||||||||    
T  37131570 tgcagcaatttaacctaatttttttccactcatttgctttatta-gtttgcaattatttaacttaacaaatttcatctaaaaaaatgcatcacaccaatt 37131472  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  37131471 tcattcctatc 37131461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 627560 - 627628
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaa 290  Q
    ||||||||||||||||||| ||||||||||||||| || |||||  || ||| | |||||| |||||||    
T  627560 tgcagcaatttaacctaattttttcccgctcatttactttattacatttgcaattatttaacctaacaa 627628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 44543793 - 44543721
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||| ||| |||||||||||||| |||| |||| ||| | |||||| |||| |||||| ||||    
T  44543793 caatttaacctaatttttccccgctcatttgctttatttggtttgcaattatttaacctaaaaaattctatct 44543721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 3249508 - 3249469
Alignment:
Q  313 gcaccaatttcattcctatcatgttggctatatccttatt 352  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  3249508 gcaccaatttcatttctatcatgttggctatatctttatt 3249469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 3249727 - 3249680
Alignment:
Q  309 catcgcaccaatttcattcctatcatgttggctatatccttatttatt 356  Q
    ||||| |||||||| |||| |||| |||||||||||||||||||||||    
T  3249727 catcgtaccaatttaattcatatcttgttggctatatccttatttatt 3249680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 15256645 - 15256568
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||| |||| |||||| |||||| || |  || || ||||||||||||  ||||||| ||||||||||||||||    
T  15256645 tgcagcaacttaatctaataatttccctctaaaatgttgcattaggttagcaacaatttaacctaacaaattccatct 15256568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 28612104 - 28612039
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaa 287  Q
    |||| |||||||||||||| |||||| |||||||| || ||||||||| ||| | |||||| ||||    
T  28612104 tgcaacaatttaacctaattttttccagctcattttctttattaggtttgcaattatttaacctaa 28612039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 29550156 - 29550237
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattag----gttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||| ||||||||||||| ||||||    ||| ||| | |||||| ||||||||||| ||||    
T  29550156 tgcaacaatttaacctaatttttttccgctcatttgctttattagctaggtttgcaattatttaacctaacaaattcaatct 29550237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 33198856 - 33198965
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||       | |||||||||||||    
T  33198856 tgcagcaatttaacctaatatttttccgctcatttgctgtattaggttaacagtgatttaacctaacaaattccatct-aaaaaatgcatcgcaccaatt 33198954  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  33198955 tcattcctatc 33198965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 2084899 - 2085010
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct-nnnnnnntacatcgcaccaat 320  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||        | ||||||||||||    
T  2084899 tgcagcaacttaatctaatattttccctctcatttgctgtattaggttagtagtaatttaacctaacaaattccatctaagaaaaatgcatcgcaccaat 2084998  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  2084999 ttcattcctatc 2085010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 332
Target Start/End: Complemental strand, 27853750 - 27853643
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttca 324  Q
    |||||||||||||||| ||||||||||||||| || ||||||||| ||| | |||||| ||||||||||||||||       | ||||||||||||||||    
T  27853750 agcaatttaacctaattttttcccgctcatttactttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatttca 27853651  T
Q  325 ttcctatc 332  Q
    ||||||||    
T  27853650 ttcctatc 27853643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 3459218 - 3459108
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||| ||| | ||||||||||||||||| |||||       | ||||||| |||||    
T  3459218 tgcagcaatttaacataattttttcccgctcatttgctttattaggtttgcaattatttaatctaacaaatttcatctaaaaaaatgcatcgcatcaatt 3459119  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  3459118 tcattcctatc 3459108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 23828210 - 23828133
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  23828210 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 23828133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 44433652 - 44433762
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||| || || |||||||||||| | |||||||||||||| |||||||||||||||| |||||||||| |||||       | |||||||||||||    
T  44433652 tgcagcaacttcacttaatattttccctcccatttgctgtattatgttagcagtaatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 44433751  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  44433752 tcattcctatc 44433762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 38111372 - 38111477
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcatt 326  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| | ||||||||||||||       | ||||||||||||||||||    
T  38111372 caatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacccaacaaattccatctgaaaaaatgcatcgcaccaatttcatt 38111471  T
Q  327 cctatc 332  Q
    ||||||    
T  38111472 cctatc 38111477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 333
Target Start/End: Complemental strand, 40399579 - 40399466
Alignment:
Q  220 tatgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaa 319  Q
    |||| |||||||||||||||| |||||||||||||||| | ||||||||| | | | |||||| ||||||||||||||||       | |||||||||||    
T  40399579 tatgtagcaatttaacctaattttttcccgctcatttgttttattaggtttgtaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaa 40399480  T
Q  320 tttcattcctatca 333  Q
    ||||||||||||||    
T  40399479 tttcattcctatca 40399466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 44429082 - 44429150
Alignment:
Q  231 ttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||| |||||||||| |||||||| |||| |||||||| ||||||||||||||||    
T  44429082 ttaacctaatattttccctctcatttgctttattaggtaagcaataatttaacctaacaaattccatct 44429150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 604583 - 604508
Alignment:
Q  225 agcaatttaacctaatattttcccgctc-atttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||| |||||    
T  604583 agcaacttaacctaatattttccctctctatttgctgtattaggttagcagtaatttaacataacaaatttcatct 604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 23085883 - 23085994
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct-nnnnnnntacatcgcaccaat 320  Q
    |||| |||||||||||||| ||||||| |||||||||| ||||||||| ||| | |||||| |||| |||||||||||        ||||||||||||||    
T  23085883 tgcaacaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaataaattccatctaaaaaaaatacatcgcaccaat 23085982  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  23085983 ttcattcctatc 23085994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 1197901 - 1197978
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| | ||| | |||||| |||||||||| |||||    
T  1197901 tgcagcaatttaacctaatcttttcccgctcatttgctttattagggttgcaattatttaacctaacaaatttcatct 1197978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 23831028 - 23830951
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  23831028 tgcagaaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattgcatct 23830951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 32062840 - 32062917
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  32062840 tgcagcaatttaaactaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 32062917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 39922171 - 39922094
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||| |||| |||||||||||||||| | ||||||||| ||| | |||||| ||||||||||||||||    
T  39922171 tgcagcaatttaacttaattttttcccgctcatttgttttattaggtttgcaattatttaacctaacaaattccatct 39922094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 44429917 - 44430027
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||| || || |||||||||||| | |||||| ||||||| |||||||||||||||| |||||||||| |||||       | |||||||||||||    
T  44429917 tgcagcaacttcacttaatattttccctcccatttgttgtattatgttagcagtaatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 44430016  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  44430017 tcattcatatc 44430027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 29580123 - 29580012
Alignment:
Q  220 tatgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaa 319  Q
    |||||| |||||||||||||| |||||||||||||||| | ||||||||| ||| | |||||| |||||| ||| |||||       | |||||||||||    
T  29580123 tatgcatcaatttaacctaattttttcccgctcatttgttttattaggtttgcaattatttaaactaacacatttcatct-aaaaattgcatcgcaccaa 29580025  T
Q  320 tttcattcctatc 332  Q
    |||||||||||||    
T  29580024 tttcattcctatc 29580012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 44434176 - 44434242
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac 288  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||||||  ||||||||| |||||    
T  44434176 tgcagcaacttaacctaatattttccctctcatttgttgtattaggttagtggtaatttaacctaac 44434242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 604918 - 604820
Alignment:
Q  235 cctaatattttcccgctc-atttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcattcctatc 332  Q
    |||||||||||||| | | |||||||||||||||||| ||||||||||| |||||||||| |||||       | |||||||| |||||||||||||||    
T  604918 cctaatattttccctccctatttgctgtattaggttaccagtaatttaacctaacaaatttcatctaaaaaaatgcatcgcacaaatttcattcctatc 604820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 37410155 - 37410078
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||| |||| |||| ||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  37410155 tgcagcaatttaacttaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 37410078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 23960882 - 23960774
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||||||| | | | |||||| ||||||||||||||||        |||||||| |||||    
T  23960882 tgcagcaatttaacctaattttttcca-ctcatttgctttattaggtttgtaattatttaacctaacaaattccatctaaaaaaagacatcgcatcaatt 23960784  T
Q  322 tcattcctat 331  Q
    ||||||||||    
T  23960783 tcattcctat 23960774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 44429419 - 44429485
Alignment:
Q  221 atgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac 288  Q
    ||||||||| |||||||||||||||||| ||| |||| ||||||||||||||| |||||||| |||||    
T  44429419 atgcagcaacttaacctaatattttccctctcgtttgttgtattaggttagca-taatttaacctaac 44429485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 23838426 - 23838348
Alignment:
Q  222 tgcagcaatttaacct-aatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||| || ||| | |||||| |||||||||| |||||    
T  23838426 tgcagcaatttaaccttaattttttcccgctcatttgctttattagttttgcaattatttaacctaacaaattgcatct 23838348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 35617708 - 35617782
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||| |||| |||||||||||||||| | ||||||||| ||| | |||||| ||||||||||| ||||    
T  35617708 agcaatttaacttaattttttcccgctcatttgttttattaggtttgcaattatttaacctaacaaattctatct 35617782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 44430441 - 44430552
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac-aaattccatctnnnnnnntacatcgcaccaat 320  Q
    |||||||| |||||||| ||||||||| |||||||||| ||| |||| ||||||||||||| | ||| ||||| |||||       | | ||||||||||    
T  44430441 tgcagcaacttaacctactattttccctctcatttgctttatcaggtaagcagtaatttaacccaacaaaatttcatcttgaaaaatgcttcgcaccaat 44430540  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  44430541 ttcattcctatc 44430552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 33198652 - 33198701
Alignment:
Q  250 ctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||    
T  33198652 ctcatttgctgtattaggttagcactaatttaacctaacaaatttcatct 33198701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 37198381 - 37198271
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||| ||||||||||||| |||| ||||  || |  ||||| ||||||||||||||||       | ||| |||||||||    
T  37198381 tgcaacaatttaacctaatttttttccgctcatttgctttattcggttttcaattgtttaacctaacaaattccatctaaaaaaatgcattgcaccaatt 37198282  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  37198281 tcattcctatc 37198271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 44429247 - 44429316
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaa 291  Q
    |||| ||| ||||||||||||||| || |||||||||| |||||||| ||||||||||||| | ||||||    
T  44429247 tgcaacaacttaacctaatatttttcctctcatttgctttattaggtaagcagtaatttaacccaacaaa 44429316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 604408 - 604344
Alignment:
Q  225 agcaatttaacctaatattttcccgctc-atttgctgtattaggttagcagtaatttaatctaac 288  Q
    ||||| |||||||||||||||||| ||| ||||| |||||||||||| ||||||||||| |||||    
T  604408 agcaacttaacctaatattttccctctctatttgttgtattaggttaacagtaatttaacctaac 604344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 34947504 - 34947576
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||| |||| ||||||||||||| ||||||||| | | | |||||| |||||||||| |||||    
T  34947504 caatttaacctaatttttttccgctcatttgctttattaggtttgaaattatttaacctaacaaatttcatct 34947576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 44433825 - 44433938
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac-aaattccatctnnnnnnntacatcgcaccaat 320  Q
    |||| ||| ||||| |||||||||||| | |||||||| |||||||| |||| |||||||| | ||| |||||||||||       | | ||||||||||    
T  44433825 tgcaacaacttaacgtaatattttccctcccatttgctttattaggtaagcattaatttaacccaacaaaattccatctttaaaaatgcttcgcaccaat 44433924  T
Q  321 ttcattcctatcat 334  Q
    ||||||||||||||    
T  44433925 ttcattcctatcat 44433938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 23838219 - 23838173
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggt 268  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||    
T  23838219 tgcaacaatttaacctaattttttcccgctcatttgctttattaggt 23838173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 37198197 - 37198119
Alignment:
Q  222 tgcagcaatttaacctaatattttc-ccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| ||||  ||||||||||||| ||||||||| ||| | |||||| |||| |||||| ||||    
T  37198197 tgcagcaatttaacctaattttttttccgctcatttgctttattaggtttgcaattatttaacctaataaattctatct 37198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 44430613 - 44430678
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac 288  Q
    |||||||| ||||||||||||||||||  |||| || ||||||||||||||| |||||||| |||||    
T  44430613 tgcagcaacttaacctaatattttccctttcatctgttgtattaggttagca-taatttaacctaac 44430678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 44433999 - 44434110
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac-aaattccatctnnnnnnntacatcgcaccaat 320  Q
    |||| ||| ||||||||||| |||||| | |||||||| |||||||| ||||||||||||| | ||| ||||| |||||       | | ||||||||||    
T  44433999 tgcaacaacttaacctaatactttccctcccatttgctttattaggtaagcagtaatttaacccaacaaaatttcatcttgaaaaatgcttcgcaccaat 44434098  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  44434099 ttcattcctatc 44434110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 44430090 - 44430199
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac-aaattccatctnnnnnnntacatcgcaccaat 320  Q
    |||| ||| ||||| |||||||||||| | |||||||| |||||||| |||| |||||||| | ||| |||||||||||       | | ||||||||||    
T  44430090 tgcaacaacttaacgtaatattttccctcccatttgctttattaggtaagcattaatttaacccaacaaaattccatctttaaaaatgcttcgcaccaat 44430189  T
Q  321 ttcattccta 330  Q
    ||||||||||    
T  44430190 ttcattccta 44430199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 604728 - 604682
Alignment:
Q  253 atttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||| |||||||| ||||||||||||| |||||||||| |||||    
T  604728 atttgctttattaggtaagcagtaatttaacctaacaaatttcatct 604682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 44430264 - 44430375
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac-aaattccatctnnnnnnntacatcgcaccaat 320  Q
    |||| ||| ||||||||||||||| || | ||||| || |||||||| ||||||||||||| | ||| ||||| |||||       | | ||||||||||    
T  44430264 tgcaacaacttaacctaatatttttcctcccatttactttattaggtaagcagtaatttaacccaacaaaatttcatcttgaaaaatgcttcgcaccaat 44430363  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  44430364 ttcattcctatc 44430375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 13461910 - 13461837
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattcc 295  Q
    |||| ||| |||||||| || |||||| || |  ||||| ||||||||||||| ||||||| ||||||||||||    
T  13461910 tgcaacaagttaacctactaatttccctctaaaatgctgcattaggttagcagcaatttaacctaacaaattcc 13461837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 44014831 - 44014860
Alignment:
Q  309 catcgcaccaatttcattcctatcatgttg 338  Q
    ||||||||||||||||||||||||||||||    
T  44014831 catcgcaccaatttcattcctatcatgttg 44014860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 13797465 - 13797537
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattc 294  Q
    |||| ||| |||||||| | |||||| ||||||||||| ||||||||| ||| | ||||||  ||||||||||    
T  13797465 tgcatcaacttaacctagttttttcctgctcatttgctttattaggtttgcaattatttaacttaacaaattc 13797537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 47428500 - 47428421
Alignment:
Q  220 tatgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  47428500 tatgcagcaacttaacctaatattttccctcccatttgttgtattaggttagcagtaatttaacctaacaaattccatct 47428421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 54653732 - 54653622
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||||| |||||| ||||||||||| ||||       | |||| ||||||||    
T  54653732 tgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcagttatttaacctaacaaattcaatctaaaaaaatgcatcacaccaatt 54653633  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  54653632 tcattcctatc 54653622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 48076213 - 48076318
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  48076213 tgcagcaatttaatctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 48076312  T
Q  322 tcattc 327  Q
    ||||||    
T  48076313 tcattc 48076318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 36639198 - 36639305
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttca 324  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||       | ||||||||||||||||    
T  36639198 agcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatttca 36639297  T
Q  325 ttcctatc 332  Q
    ||| ||||    
T  36639298 ttcatatc 36639305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 44500695 - 44500772
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | ||||||  |||||||||||||||    
T  44500695 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacgtaacaaattccatct 44500772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 48076391 - 48076501
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  48076391 tgcagcaatttaacctaatttttccccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 48076490  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  48076491 tcattcttatc 48076501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 2481731 - 2481624
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| ||| |||||||||| |||||||||||||||||| ||||||||| ||   ||||||| ||||||||||||||||       | |||||||||||||    
T  2481731 tgcaacaacttaacctaattttttcccgctcatttgctttattaggtttgc---aatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 2481635  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  2481634 tcattcctatc 2481624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 4941707 - 4941811
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcattc 327  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||       | ||||||||||||||||||     
T  4941707 aatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattg 4941806  T
Q  328 ctatc 332  Q
    |||||    
T  4941807 ctatc 4941811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 8079044 - 8079119
Alignment:
Q  225 agcaatttaacctaatattttccc-gctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||| ||||| ||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||||    
T  8079044 agcaatttaagctaattttttccccgctcatttgttgtattaggttagcagtagtttaacctaacaaattccatct 8079119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 12796205 - 12796126
Alignment:
Q  220 tatgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||||| |||| ||||||||||| | ||||||||| ||| | |||||||||||||||||||||||    
T  12796205 tatgtagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaatctaacaaattccatct 12796126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 23952587 - 23952478
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||| ||| | |||||| |||| ||||||||| |       | |||||||||||||    
T  23952587 tgcagcaatttaacctaattttttcacgctcatttgctttattaggtttgcaattatttaacctaaaaaattccat-ttaaaaaatgcatcgcaccaatt 23952489  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  23952488 tcattcctatc 23952478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 28389854 - 28389777
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||| |||| | ||||||||||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  28389854 tgcagtaattcatcctaatattttcccgctcatttgctttattaggtttgcatttatttaacctaacaaattccatct 28389777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 53144928 - 53144851
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| | | | |||||| |||||||||| |||||    
T  53144928 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatttcatct 53144851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 22292921 - 22292993
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattc 294  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||||| |||||||||||    
T  22292921 tgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattc 22292993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 7821324 - 7821436
Alignment:
Q  220 tatgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaa 319  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||   | ||| | |||||| |||| |||||||||||       | |||||||||||    
T  7821324 tatgcagcaatttaacctaattttttcccgcccatttgctttattaatgttgcaattatttaacctaataaattccatctaaaaaaatgcatcgcaccaa 7821423  T
Q  320 tttcattcctatc 332  Q
    |||||||||||||    
T  7821424 tttcattcctatc 7821436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 43161823 - 43161719
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||||||||||||||||  ||||||||| ||| | |||||| |||||||||| |||||       |||||||||||||||    
T  43161823 tgcaacaatttaacctaattttttcccgctcatttgcattattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatacatcgcaccaatt 43161724  T
Q  322 tcatt 326  Q
     ||||    
T  43161723 ccatt 43161719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 52689695 - 52689591
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcattc 327  Q
    |||||| |||||| |||||||||||||||||| ||||||||| | | | |||||| |||||||||| |||||       | |||||||||||||||||||    
T  52689695 aatttatcctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattc 52689596  T
Q  328 ctatc 332  Q
    |||||    
T  52689595 ctatc 52689591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 2177287 - 2177397
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||||||||  |||| |||||||||||||||||| ||||||||| ||| | | |||| |||||||||| |||||       | |||||||||||||    
T  2177287 tgcagcaatttaatttaattttttcccgctcatttgctttattaggtttgcaattacttaacctaacaaatttcatctaaaaacatgcatcgcaccaatt 2177386  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  2177387 tcattcatatc 2177397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 7526527 - 7526450
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||| ||||||||||| |||||| || |  ||||| | ||||||||||||||||||| ||||||||||||||||    
T  7526527 tgcagcaacttaacctaataatttccctctaaaatgctgaagtaggttagcagtaatttaacctaacaaattccatct 7526450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 8118620 - 8118730
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||| ||||||||||||| ||||||| | ||| | |||||| |||||||||| |||||       | | |||||||||||    
T  8118620 tgcaacaatttaacctaatttttttccgctcatttgctttattagggttgcaattatttaacctaacaaatttcatctaaaaaaatgcttcgcaccaatt 8118719  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  8118720 tcattcctatc 8118730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 23952863 - 23952786
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||| ||||||||||| | ||||||||| ||| | ||||||  |||||||||||||||    
T  23952863 tgcagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaacttaacaaattccatct 23952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 24049588 - 24049665
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||| |||| |||||    
T  24049588 tgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacgaatttcatct 24049665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 47768975 - 47769052
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||| |||||||||||||  |||||||| ||| | |||||| |||||||||| |||||    
T  47768975 tgcagcaatttaacctaatttttttccgctcatttgcttcattaggtttgcaattatttaacctaacaaatttcatct 47769052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 48076568 - 48076645
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||| ||||| ||||||| |||||||||  || | |||||| ||||||||||||||||    
T  48076568 tgcagcaatttaacctaatttttttccgctaatttgctttattaggtttacaattatttaacctaacaaattccatct 48076645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 22292720 - 22292791
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||||| ||||||||| ||||||    
T  22292720 aatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaataccatct 22292791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 21581351 - 21581282
Alignment:
Q  230 tttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||| ||||| |||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  21581351 tttaacctaattttttctcgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 21581282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 28379844 - 28379768
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||||| ||||| ||||||||||    
T  28379844 tgcatcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaac-aattccatct 28379768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 29967202 - 29967279
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||| |||||||||| |||||||||||||||| | |||||| || ||| | || ||| ||||||||||||||||    
T  29967202 tgcagcaacttaacctaattttttcccgctcatttgttttattagatttgcaattatataacctaacaaattccatct 29967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 36639368 - 36639445
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||| |||||| || ||||||| | ||| | |||||| |||||||||| |||||    
T  36639368 tgcagcaatttaacctaattttttcccgttcattttctttattaggattgcaattatttaacctaacaaatttcatct 36639445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 8078918 - 8078994
Alignment:
Q  225 agcaatttaacctaatattttccc-gctcatttg-ctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||| ||||| ||||||| ||||||||  |||||||| |||||||||| ||||| ||||||||||||||||    
T  8078918 agcaatttaagctaattttttccccgctcattttactgtattatgttagcagtagtttaacctaacaaattccatct 8078994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 7796808 - 7796879
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||| | | | | |||||| ||||||||||    
T  7796808 tgcagcaatttaacctaatttttttccgctcatttgctttattaggattgtaattatttaacctaacaaatt 7796879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 9711315 - 9711358
Alignment:
Q  256 tgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||||||||||| |||||||||| |||||    
T  9711315 tgctgtattaggttagcagtaatttaacctaacaaatttcatct 9711358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 7821545 - 7821652
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttca 324  Q
    |||||||||||||||| |||| | ||||||||||| ||||||||| | | | |||||| |||  ||||| |||||       | ||||||||||||||||    
T  7821545 agcaatttaacctaattttttactgctcatttgctttattaggtttgtaattatttaacctacaaaatttcatctaaaaaaatgcatcgcaccaatttca 7821644  T
Q  325 ttcctatc 332  Q
    ||||||||    
T  7821645 ttcctatc 7821652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 43162006 - 43161933
Alignment:
Q  224 cagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccat 297  Q
    |||||||||||| |||  ||||| |||||||||||| ||||||||| ||| | ||||||  |||||||||||||    
T  43162006 cagcaatttaacttaactttttcacgctcatttgctttattaggtttgcaattatttaacttaacaaattccat 43161933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 15456315 - 15456362
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggtt 269  Q
    ||||||||||||||||||| || |||| |||||||||| |||||||||    
T  15456315 tgcagcaatttaacctaattttatcccactcatttgctttattaggtt 15456362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 15463699 - 15463746
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggtt 269  Q
    ||||||||||||||||||| || |||| |||||||||| |||||||||    
T  15463699 tgcagcaatttaacctaattttatcccactcatttgctttattaggtt 15463746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 257
Target Start/End: Original strand, 24046088 - 24046123
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttg 257  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24046088 tgcagcaatttaacctaattttttcccgctcatttg 24046123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 28380054 - 28379981
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattcca 296  Q
    |||| |||||||||||||| |||||  ||||||||| | ||||||||| ||| | |||||| |||||||||||||    
T  28380054 tgcaccaatttaacctaat-ttttcttgctcatttgttttattaggtttgcaattatttaacctaacaaattcca 28379981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 8079232 - 8079261
Alignment:
Q  309 catcgcaccaatttcattcctatcatgttg 338  Q
    ||||||||||||||||||||||||||||||    
T  8079232 catcgcaccaatttcattcctatcatgttg 8079261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 8118405 - 8118481
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| ||||||||| |||| |||| | ||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  8118405 tgcaacaatttaacttaatttttttc-gctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 8118481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 8397825 - 8397748
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||| | |||| |||| | ||||||||| ||| | ||||||  ||||||||| |||||    
T  8397825 tgcagcaatttaacctaatttttttctgctcgtttgttttattaggtttgcaattatttaacttaacaaatttcatct 8397748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 8079327 - 8079395
Alignment:
Q  231 ttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||| ||||||  ||||||  || ||||||||| ||| | |||||| ||||||||||||||||    
T  8079327 ttaacctaattttttcctactcattacctttattaggtttgcaattatttaacctaacaaattccatct 8079395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 10466612 - 10466644
Alignment:
Q  259 tgtattaggttagcagtaatttaatctaacaaa 291  Q
    |||||||||||||||||||||||| ||||||||    
T  10466612 tgtattaggttagcagtaatttaacctaacaaa 10466644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 43761975 - 43762079
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcatt 326  Q
    ||||||||||||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||| |||||       | ||||||||||||||||||    
T  43761975 caatttaacctaatattttccggttcattttgtgtattaggttagcagtaatttaatctaacaaatttcatctaaaaaagtgcatcgcaccaatttcatt 43762074  T
Q  327 cctat 331  Q
    |||||    
T  43762075 cctat 43762079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 1156148 - 1156038
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  1156148 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 1156049  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  1156048 tcattcttatc 1156038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 44263112 - 44263222
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  44263112 tgcagcaatttaacctaattttttcccgttcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 44263211  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  44263212 tcattcctatc 44263222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 318578 - 318688
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  318578 tgcagcaatttaatctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 318677  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  318678 tcattcctatc 318688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 42492248 - 42492137
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct-nnnnnnntacatcgcaccaat 320  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||| ||| | |||||| ||||||||||||||||        | ||||||||||||    
T  42492248 tgcagcaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaaatgcatcgcaccaat 42492149  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  42492148 ttcattcctatc 42492137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 51114116 - 51114190
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  51114116 agcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 51114190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 38684038 - 38684148
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||  | |||||| ||||||||||||||||       | |||||||||||||    
T  38684038 tgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcgattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 38684137  T
Q  322 tcattcctatc 332  Q
    ||||| |||||    
T  38684138 tcatttctatc 38684148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 51113929 - 51114039
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||||| |||||| || ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  51113929 tgcagcaatttaacctaattttttcccgttcatttactttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 51114028  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  51114029 tcattcatatc 51114039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 5428551 - 5428628
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  5428551 tgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 5428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 27296360 - 27296466
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| ||||| ||||||||| || ||||||||| ||| | |||||| |||||||||| |||||       |||||||||||||||    
T  27296360 tgcaacaatttaacctaattttttctcgctcattttctttattaggtttgcaattatttaacctaacaaatttcatctataaaaatacatcgcaccaatt 27296459  T
Q  322 tcattcc 328  Q
    |||||||    
T  27296460 tcattcc 27296466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 42497016 - 42496939
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||| | |||||| || ||| | |||||| ||||||||||||||||    
T  42497016 tgcagcaatttaacctaattttttcccgctcatttgttttattagatttgcaattatttaacctaacaaattccatct 42496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 42497374 - 42497297
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  42497374 tgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 42497297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 332
Target Start/End: Complemental strand, 16165766 - 16165658
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct-nnnnnnntacatcgcaccaatttc 323  Q
    |||||||||||||||| |||||||| ||||||||| ||||||||| ||| | |||||| |||||||||| |||||        | |||||||||||||||    
T  16165766 agcaatttaacctaattttttcccgatcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaaatgcatcgcaccaatttc 16165667  T
Q  324 attcctatc 332  Q
    |||||||||    
T  16165666 attcctatc 16165658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 21617785 - 21617856
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  21617785 aatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 21617856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 51113746 - 51113857
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct-nnnnnnntacatcgcaccaat 320  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||| || ||| | |||||| |||||||||| |||||        | ||||||||||||    
T  51113746 tgcagcaatttaacctaatttttttccgctcatttgctttattagatttgcaattatttaacctaacaaatttcatctaaaaaaaatgcatcgcaccaat 51113845  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  51113846 ttcattcctatc 51113857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 5428956 - 5429033
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| ||||| |||| |||||||| |||| ||||||||| ||| | |||||| ||||||||||||||||    
T  5428956 tgcagcaatttaaactaatttttttccgctcatctgctttattaggtttgcaattatttaagctaacaaattccatct 5429033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 44262687 - 44262764
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||| || |||||||||| ||||| ||| ||| | |||||| ||||||||||||||||    
T  44262687 tgcagcaatttaacctaatttttttccactcatttgctttattacgtttgcaattatttaacctaacaaattccatct 44262764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 6537733 - 6537661
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||| |||| ||||||||||||||| || ||||||||| ||| | |||||| ||||||||||||||||    
T  6537733 caatttaacttaattttttcccgctcatttactttattaggtttgcaattatttaacctaacaaattccatct 6537661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 52740726 - 52740834
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct-nnnnnnntacatcgcaccaatttc 323  Q
    |||||||||||||||| |||||||||||||||||| |||||||||  || | ||||||  |||||||||| ||||        | |||||||||||||||    
T  52740726 agcaatttaacctaattttttcccgctcatttgctttattaggtttacaattatttaacttaacaaattcaatctaaaaaaaatgcatcgcaccaatttc 52740825  T
Q  324 attcctatc 332  Q
    |||||||||    
T  52740826 attcctatc 52740834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 331
Target Start/End: Original strand, 5429071 - 5429184
Alignment:
Q  222 tgcagcaatttaacctaat--attttccc--gctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcacc 317  Q
    |||||||||||||||||||  ||||||||  ||||| ||||| ||||||||| ||| | |||||| ||||||||||||||||       | ||| |||||    
T  5429071 tgcagcaatttaacctaatttattttcccccgctcaattgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatagcacc 5429170  T
Q  318 aatttcattcctat 331  Q
    ||||||||||||||    
T  5429171 aatttcattcctat 5429184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 3227305 - 3227229
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||| | ||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  3227305 tgcatcaatttaacctaatttttttc-gctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 3227229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 27296185 - 27296262
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| ||| |||||| ||||||| ||||||||| ||| | |||||| |||| |||||||||||    
T  27296185 tgcaacaatttaacctaatttttccccgcttatttgctttattaggtttgcaattatttaacctaataaattccatct 27296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 28950340 - 28950277
Alignment:
Q  224 cagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaa 287  Q
    ||||||||||||||||| |||||||||| ||||||| ||||||||| ||| | |||||| ||||    
T  28950340 cagcaatttaacctaattttttcccgctaatttgctttattaggtttgcaattatttaacctaa 28950277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 51272570 - 51272499
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatc 298  Q
    |||||||||||||| |||| | ||||||||||| ||||||||| ||| | |||||| |||| ||||||||||    
T  51272570 caatttaacctaatttttttctgctcatttgctttattaggtttgcaattatttaacctaataaattccatc 51272499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 44263333 - 44263409
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatc 298  Q
    |||| |||| ||||||||| ||||| |||||||||||  ||||||||| ||| | |||||| |||||||||| ||||    
T  44263333 tgcatcaatataacctaattttttctcgctcatttgccttattaggtttgcaattatttaacctaacaaattacatc 44263409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 1647566 - 1647678
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||| ||||||||||  |||| | ||||||||||| ||||||||| | | | |||||| |||||||||| |||||       |  ||||||||||||    
T  1647566 tgcagcagtttaacctaagttttttctgctcatttgctttattaggtttggaattatttaacctaacaaatttcatctaaaaaaatgaatcgcaccaatt 1647665  T
Q  322 tcattcctatcat 334  Q
    ||||| |||||||    
T  1647666 tcatttctatcat 1647678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 18912350 - 18912397
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggtt 269  Q
    ||||||||||||||||||| |||| |||| |||||||| |||||||||    
T  18912350 tgcagcaatttaacctaatttttttccgcccatttgctttattaggtt 18912397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 28950070 - 28950023
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggtt 269  Q
    |||| |||||||||||||| |||| ||||||||||||| |||||||||    
T  28950070 tgcaacaatttaacctaatttttttccgctcatttgctttattaggtt 28950023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 44099747 - 44099676
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| ||||  |||||||||||| ||||||||| ||| | |||||| |||| ||||| |||||    
T  44099747 aatttaacctaattttttttcgctcatttgctttattaggtttgcaattatttaacctaataaatttcatct 44099676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 33375656 - 33375721
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaa 290  Q
    |||||||||||||||| |||  |||||||||| || ||||||||| ||| | |||||| |||||||    
T  33375656 agcaatttaacctaatttttctccgctcatttactttattaggtttgcaattatttaacctaacaa 33375721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 16671628 - 16671738
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  16671628 tgcagcaatataacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 16671727  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  16671728 tcattcctatc 16671738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 17645996 - 17646106
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  17645996 tgcagcaatataacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 17646095  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  17646096 tcattcctatc 17646106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 23591496 - 23591386
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  23591496 tgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 23591397  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  23591396 tcattcctatc 23591386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 4454947 - 4455055
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| ||| |||||||||||||||||| |  |||||||||||||||||||||||||||||| ||||||||||||||||       | ||||||| |||||    
T  4454947 tgcaacaacttaacctaatattttccctccaatttgctgtattaggttagcagtaatttaacctaacaaattccatctaaaaaaatgcatcgcatcaatt 4455046  T
Q  322 tcattccta 330  Q
    |||||||||    
T  4455047 tcattccta 4455055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 4680978 - 4680901
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  4680978 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 4680901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 11650090 - 11650013
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  11650090 tgcaacaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 11650013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 12140943 - 12140833
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||| ||||||||||||  ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  12140943 tgcagcaatttaacctaatttttttccgctcatttgcgttattaggtttgcaattatttaacctaacaaatttcatctaaaagaatgcatcgcaccaatt 12140844  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  12140843 tcattcctatc 12140833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 18486657 - 18486734
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  18486657 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 18486734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 4681227 - 4681114
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct-nnnnnnntacatcgcaccaat 320  Q
    |||| |||||||||||||| |||||||||||||||||| ||||| ||| ||| | |||||| |||| |||||||||||        ||||||||||||||    
T  4681227 tgcaacaatttaacctaattttttcccgctcatttgctttattatgtttgcaattatttaacctaataaattccatctaaaaaaaatacatcgcaccaat 4681128  T
Q  321 ttcattcctatcat 334  Q
    ||||||||||||||    
T  4681127 ttcattcctatcat 4681114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 18487180 - 18487284
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcattc 327  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||       | |||| ||||||||||||||    
T  18487180 aatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcacaccaatttcattc 18487279  T
Q  328 ctatc 332  Q
    |||||    
T  18487280 ctatc 18487284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 27716611 - 27716503
Alignment:
Q  224 cagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttc 323  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||| ||| | |||||| ||||||| ||||||||       | ||||||||||||||     
T  27716611 cagcaatttaacctaattttatcccgctcatttgctttattaggtttgcaattatttaacctaacaacttccatctaaaaaaatgcatcgcaccaatttg 27716512  T
Q  324 attcctatc 332  Q
    |||||||||    
T  27716511 attcctatc 27716503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 27716388 - 27716314
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  27716388 agcaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaattccatct 27716314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 48640883 - 48640772
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct-nnnnnnntacatcgcaccaat 320  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||        | ||||||||||||    
T  48640883 tgcagcaatttaacctaatttcttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaaatgcatcgcaccaat 48640784  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  48640783 ttcattcctatc 48640772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 2354747 - 2354670
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||| |||| |||||| ||||||||||| ||||||||| ||| | ||||||| |||||||||||||||    
T  2354747 tgcagcaatttaacgtaatgttttccagctcatttgctttattaggtttgcaattatttaatataacaaattccatct 2354670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 9142043 - 9141966
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  9142043 tgcagcaatttaacctaattttttcctgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatct 9141966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 43059223 - 43059291
Alignment:
Q  231 ttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||| ||||| |||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  43059223 ttaacctaattttttctcgctcatttgctttattaggtttgcaattatttaatctaacaaattccatct 43059291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 2527036 - 2526925
Alignment:
Q  222 tgcagcaatttaacctaatatttt-cccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaat 320  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| | |||||| ||||| |||| |||||       | ||||||||||||    
T  2527036 tgcagcaatttaacctaatttttttcccgctcatttgctttattaggtttgcaattatttaacctaactaattacatctaaaaaaatgcatcgcaccaat 2526937  T
Q  321 ttcattcctatc 332  Q
    |||||| |||||    
T  2526936 ttcatttctatc 2526925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 4455390 - 4455467
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| ||||||||||||||| |||||| || |  ||||| ||||||||||||| ||||||| ||||||||||||||||    
T  4455390 tgcaacaatttaacctaataatttccctctaaaatgctgcattaggttagcagcaatttaacctaacaaattccatct 4455467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 11646479 - 11646369
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||| |||| ||||| |||| ||||||||||||| ||||||||| ||| | |||||| |||||||||||||| |       | ||| |||||||||    
T  11646479 tgcagcaacttaatctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatataaaaaaatgcatagcaccaatt 11646380  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  11646379 tcattcctatc 11646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 21224161 - 21224271
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||| ||||| ||||||| |||||||||  || | |||||| ||||||| || |||||       ||||||||| |||||    
T  21224161 tgcagcaatttaacctaatttttttccgctaatttgctttattaggtttacaattatttaacctaacaagtttcatctaaaaaaatacatcgcatcaatt 21224260  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  21224261 tcattcctatc 21224271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 45419718 - 45419606
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||| ||||||||||||| ||||   ||||||||||| ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  45419718 tgcagtaatttaacctaatttttttaagctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaagatgcatcgcaccaatt 45419619  T
Q  322 tcattcctatcat 334  Q
    ||||| |||||||    
T  45419618 tcatttctatcat 45419606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 341
Target Start/End: Complemental strand, 23591713 - 23591594
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| ||||| || ||||| |||||||  ||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  23591713 tgcaacaattgaagctaattttttccctttcatttgctttattaggtttgcaattatttaacctaacaaattccatctgaaaaaatgcatcgcaccaatt 23591614  T
Q  322 tcattcctatcatgttggct 341  Q
    |||||| |||| | ||||||    
T  23591613 tcattcttatcctcttggct 23591594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 22324307 - 22324417
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||||||||||||||  |||||||||||||| || | ||||||| | | | ||| || |||||||||| |||||       | |||||||||||||    
T  22324307 tgcagcaatttaacctaattgtttcccgctcatttacttttttaggtttgtaattattcaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 22324406  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  22324407 tcattcctatc 22324417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 22773992 - 22773916
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||||||||||||||||| || || ||| ||| | ||||||||||||||||| |||||    
T  22773992 tgcaacaatttaacctaat-ttttcccgctcatttgctttactatgtttgcaattatttaatctaacaaatttcatct 22773916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 32278218 - 32278157
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaat 283  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||| ||| | |||||||    
T  32278218 tgcagcaatttaacctaattttttcccgctcatttactttattaggtttgcaattatttaat 32278157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 35124748 - 35124858
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| ||||||||| |||| ||||  || ||||||||| ||||||||| ||| | |||||| |||||||||||| |||       | |||||||||||||    
T  35124748 tgcaacaatttaacttaattttttgtcgttcatttgctttattaggtttgcaattatttaacctaacaaattccgtctaaaaaaatgcatcgcaccaatt 35124847  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  35124848 tcattcctatc 35124858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 11646013 - 11645942
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    |||| ||| |||||||||| |||||||||||||||||| ||||||||| | | | |||||| ||||||||||    
T  11646013 tgcaacaacttaacctaattttttcccgctcatttgctttattaggtttgtaattatttaacctaacaaatt 11645942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 11646650 - 11646697
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggtt 269  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||||    
T  11646650 tgcagcaatttaacctaatttttttccgctcatttgctttattaggtt 11646697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 298
Target Start/End: Complemental strand, 16362774 - 16362696
Alignment:
Q  220 tatgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatc 298  Q
    ||||||||||| ||| ||||| |||| ||||||||||| | |||||| || ||||| |||||| |||||||||| ||||    
T  16362774 tatgcagcaatgtaatctaatttttttccgctcatttgttttattagatttgcagttatttaacctaacaaatttcatc 16362696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 16671269 - 16671346
Alignment:
Q  222 tgcagcaattt-aacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  16671269 tgcagcaattttaaccaaatattttcc-gctcatttgctctattaggtttgcaattatttaacctaacaaatttcatct 16671346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 17645637 - 17645714
Alignment:
Q  222 tgcagcaattt-aacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||| ||| | |||||| |||||||||| |||||    
T  17645637 tgcagcaattttaaccaaatattttcc-gctcatttgctctattaggtttgcaattatttaacctaacaaatttcatct 17645714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 19222128 - 19222206
Alignment:
Q  222 tgcagcaatttaacctaatattttc-ccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| ||||  ||| ||||||||| |||||||||  || | |||||| ||||||||||||||||    
T  19222128 tgcagcaatttaacctaattttttttccgttcatttgctttattaggtttacaattatttaacctaacaaattccatct 19222206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 34837210 - 34837288
Alignment:
Q  222 tgcagcaatttaacctaatattttc-ccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| ||||  ||||| ||||||| |||||||||  || | |||||| ||||||||||||||||    
T  34837210 tgcagcaatttaacctaattttttttccgcttatttgctttattaggtttacaattatttaacctaacaaattccatct 34837288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 9142209 - 9142148
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaaca 289  Q
    ||||||||||||| |||||||||||||||||| |||| |||| ||| | |||||| ||||||    
T  9142209 aatttaacctaattttttcccgctcatttgctttatttggtttgcaattatttaacctaaca 9142148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 11646291 - 11646218
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattcc 295  Q
    |||||||| |||||||||| |||| || |||||||||| | ||||||| ||| | |||||| ||||||||||||    
T  11646291 tgcagcaacttaacctaatttttttccactcatttgctttgttaggtttgcaattatttaacctaacaaattcc 11646218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 16377509 - 16377432
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||| || ||||||||||| |||||| || |   |||| ||||||||||||| ||||||| ||||||||||||||||    
T  16377509 tgcagtaacttaacctaataatttccctctaaaaagctgcattaggttagcagcaatttaacctaacaaattccatct 16377432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 45419904 - 45419814
Alignment:
Q  242 ttttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcattcctatc 332  Q
    |||| ||||||||||||| ||||||||| | | | |||||| ||||||||||||||||       | |||||||||||||||||| |||||    
T  45419904 tttttccgctcatttgctttattaggtttgtaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatttcatttctatc 45419814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 48641095 - 48640993
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttca 324  Q
    ||||||||||| || | |||||||||||||||||| ||||||||| ||| | |||||| | || ||||| |||||       | ||||||||||||||||    
T  48641095 agcaatttaacatagttttttcccgctcatttgctttattaggtttgcaattatttaaccaaaaaaatttcatctaaaaaaatgcatcgcaccaatttca 48640996  T
Q  325 ttc 327  Q
    |||    
T  48640995 ttc 48640993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 299
Target Start/End: Complemental strand, 16376532 - 16376489
Alignment:
Q  256 tgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||    
T  16376532 tgctgcattaggttagcagcaatttaacctaacaaattccatct 16376489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 38694892 - 38694821
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    |||||||| ||||||||||| |||||| || |  ||||| ||||||||||||| ||||||| | ||||||||    
T  38694892 tgcagcaacttaacctaataatttccctctaaaatgctgcattaggttagcagcaatttaacccaacaaatt 38694821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 40450183 - 40450112
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    ||||||||||||||||||| | |||  ||||||||||| |||||| || ||| | |||||| ||||||||||    
T  40450183 tgcagcaatttaacctaatttattcgtgctcatttgctttattagatttgcaattatttaacctaacaaatt 40450112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 23591276 - 23591238
Alignment:
Q  227 caatttaacctaatattttcccgctcatttgctgtatta 265  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  23591276 caatttaacctaattttttcccgctcatttgctttatta 23591238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 30991482 - 30991560
Alignment:
Q  222 tgcagcaatttaacctaatattttc-ccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| ||||||||| |||| ||||  ||||||||||||| ||||| ||| ||| | |||||| ||||||||||||||||    
T  30991482 tgcaacaatttaacttaattttttttccgctcatttgctttattatgtttgcaattatttaacctaacaaattccatct 30991560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 16492626 - 16492550
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||| || | |||||| ||||||||||| ||||| ||| ||| | |||||| |||||||||| |||||    
T  16492626 tgcagcaatttaacttatttttttcc-gctcatttgctttattatgtttgcaattatttaacctaacaaatttcatct 16492550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 21128063 - 21128136
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattcc 295  Q
    ||||||| ||||||||||| |||| ||||| ||||||| ||||| |||  || | |||||| ||||||||||||    
T  21128063 tgcagcagtttaacctaatctttttccgctgatttgctttattacgtttccatttatttaacctaacaaattcc 21128136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 46264345 - 46264288
Alignment:
Q  242 ttttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||| |||||||||| ||||||||| ||| | |||||| ||||||||||| ||||    
T  46264345 ttttccccctcatttgctttattaggtttgcaattatttaacctaacaaattctatct 46264288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 48641523 - 48641447
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||| || |||||||||| |||||| ||||||||||| ||||| ||| ||| | |||||| |||||||||| |||||    
T  48641523 tgcaggaacttaacctaat-ttttcctgctcatttgctttattaagtttgcaattatttaacctaacaaatttcatct 48641447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 9828942 - 9829052
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  9828942 tgcagcaatttaacttaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 9829041  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  9829042 tcattcctatc 9829052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 23902530 - 23902607
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||| ||||    
T  23902530 tgcagcaatttaacctaatattttcccgttcatttgttgtattaggttaccagtaatttaacctaacaaattctatct 23902607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 17200012 - 17200086
Alignment:
Q  225 agcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |||| ||||| |||||    
T  17200012 agcaatttaacctaatattttccctctcatttgctatattaggttaacagtaatttaacctaataaatttcatct 17200086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 25068211 - 25068322
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaac-aaattccatctnnnnnnntacatcgcaccaat 320  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||||| ||||| |||||||||||       | ||||||||||||    
T  25068211 tgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaaattccatctaaaaaaatgcatcgcaccaat 25068310  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  25068311 ttcattcctatc 25068322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 4811145 - 4811068
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||| ||| | |||||| ||||| ||||||||||    
T  4811145 tgcagcaatttaacctaattttttcccgctcgtttgctttattaggtttgcaattatttaacctaactaattccatct 4811068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 17202873 - 17202950
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||| || ||| | |||||| ||||||||||||||||    
T  17202873 tgcagcaatttaacctaattttttcccgcccatttgctttattagatttgcaattatttaacctaacaaattccatct 17202950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 17906883 - 17906806
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||| | | | |||||| ||||||||||||||||    
T  17906883 tgcagcaatttaacctaattttttccagctcatttgctttattaggtttgtaattatttaacctaacaaattccatct 17906806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 25067985 - 25068095
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| ||||| ||| | ||||||  ||||||||| |||||       | |||||||||||||    
T  25067985 tgcagcaatttaacctaatttttttccgctcatttgctttataaggtttgcaattatttaacataacaaattacatctaaaaaaatgcatcgcaccaatt 25068084  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  25068085 tcattcctatc 25068095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 17011132 - 17011183
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagca 273  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  17011132 tgcagcaatttaacctaatattttcccgctcatttgatgtattatgttagca 17011183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 17080058 - 17080135
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||  ||||||||||||||||  |  ||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  17080058 tgcagcaacctaacctaatattttccgtccaatttgctgtattaggttagcattaatttaacctaacaaattctatct 17080135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 27579621 - 27579698
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| ||||||| |||||||||| ||||||||| ||| | |||||| ||||||||||| ||||    
T  27579621 tgcaacaatttaacctaattttttcccactcatttgctttattaggtttgcaattatttaacctaacaaattcaatct 27579698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 8685186 - 8685236
Alignment:
Q  237 taatattttcccgctcatttgctgtattaggttagcagtaatttaatctaa 287  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  8685186 taatattttcccgctcatttgctgtattatgttagcaataatttaacctaa 8685236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 17202661 - 17202731
Alignment:
Q  230 tttaacctaatattttcc-cgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||| |||| | |||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  17202661 tttaacctaatttttttcacgctcatttgctttattaggtttgcaattatttaatctaacaaattccatct 17202731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 23610455 - 23610565
Alignment:
Q  222 tgcagcaatttaacctaatatttt-cccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaat 320  Q
    |||| |||||||||||||| |||| |||||||||||||| |||||||||  || | |||||| ||||||||||||||||       | ||||||||||||    
T  23610455 tgcaacaatttaacctaatttttttcccgctcatttgctttattaggtt-tcaattatttaacctaacaaattccatctacaaaaatgcatcgcaccaat 23610553  T
Q  321 ttcattcctatc 332  Q
    |||||| |||||    
T  23610554 ttcatttctatc 23610565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 17201620 - 17201730
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||  |||| ||||||||||| | ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  17201620 tgcaacaatttaacctaacttttttccgctcatttgttttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 17201719  T
Q  322 tcattcctatc 332  Q
    ||||| |||||    
T  17201720 tcattgctatc 17201730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 329
Target Start/End: Original strand, 808495 - 808601
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||||||||||||| |||| ||||| |||||||||||| |||||| || ||| | |||||| || |||||||| ||||       | |||||||||||||    
T  808495 tgcagcaatttaacgtaattttttctcgctcatttgctttattagatttgcaattatttaa-cttacaaattctatctaaaaaattgcatcgcaccaatt 808593  T
Q  322 tcattcct 329  Q
    ||||||||    
T  808594 tcattcct 808601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 808852 - 808930
Alignment:
Q  222 tgcagcaatttaacctaa-tattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||| | ||||||| |||||||||| ||||||||| ||| | |||||| | |||||||| |||||    
T  808852 tgcagcaatttaacctaatttttttcccactcatttgctttattaggtttgcaattatttaaccaaacaaatttcatct 808930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 8674507 - 8674557
Alignment:
Q  237 taatattttcccgctcatttgctgtattaggttagcagtaatttaatctaa 287  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||||| ||||    
T  8674507 taatattttcccgcttatttgctgtattatgttagcaataatttaacctaa 8674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 17200347 - 17200424
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||| ||||||||||| |||||  || |  ||||| | ||||||||||| ||||||| ||||||||||||||||    
T  17200347 tgcagcaacttaacctaataatttccttctaaaatgctgcaataggttagcagcaatttaacctaacaaattccatct 17200424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 23622247 - 23622312
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    ||||||||||||  ||||||| |||||||||| ||||||||| ||| | |||||| ||||||||||    
T  23622247 aatttaacctaactttttcccactcatttgctttattaggtttgcaattatttaacctaacaaatt 23622312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 24223607 - 24223530
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||| ||||||||||| |||||| || |  ||||| |||| |||||||| ||||||  ||||||||||||||||    
T  24223607 tgcagcaacttaacctaataatttccctctaaaatgctgcattaagttagcagcaatttagcctaacaaattccatct 24223530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 17200468 - 17200511
Alignment:
Q  256 tgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||    
T  17200468 tgctgcattaggttagcagcaatttaacctaacaaattccatct 17200511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 29201581 - 29201624
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtatta 265  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||    
T  29201581 tgcagcaatttaacctaatttttttccgctcatttgctttatta 29201624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 4100401 - 4100293
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatt----tgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcacc 317  Q
    ||||||||||||||||||| |||| ||| |||||    |||| ||||| ||| ||| | |||||| ||||||||||||||||       | |||||||||    
T  4100401 tgcagcaatttaacctaatttttttccgttcattaatttgctttattatgtttgcaattatttaagctaacaaattccatctaaaaaaatgcatcgcacc 4100302  T
Q  318 aatttcatt 326  Q
    |||||||||    
T  4100301 aatttcatt 4100293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 24223240 - 24223166
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattcca 296  Q
    |||| ||| ||||||||||| |||||| || |  ||||| ||||||||||||  ||||||| |||||||||||||    
T  24223240 tgcatcaacttaacctaataatttccctcttaaatgctgcattaggttagcaacaatttaacctaacaaattcca 24223166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 32208490 - 32208413
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagc-agtaatttaatctaacaaattccatct 299  Q
    |||| |||||||| ||||| |||||| ||||||||||| ||||||||| || | || ||||| ||||||||||||||||    
T  32208490 tgcaacaatttaatctaattttttcc-gctcatttgctttattaggtttgcaattattttaacctaacaaattccatct 32208413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 17080361 - 17080390
Alignment:
Q  309 catcgcaccaatttcattcctatcatgttg 338  Q
    ||||||||||||||||||||||||||||||    
T  17080361 catcgcaccaatttcattcctatcatgttg 17080390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 17203678 - 17203747
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaa 291  Q
    |||| ||| ||||||||||| |||||| || |  ||||| ||||||||||||| ||||||| ||||||||    
T  17203678 tgcaacaacttaacctaataatttccctctaaaatgctgcattaggttagcagcaatttaacctaacaaa 17203747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 27315310 - 27315386
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||| |||||||||| ||||||  || ||||||| ||||||||| ||| | |||||| ||||||||||| ||||    
T  27315310 tgcagcaacttaacctaattttttcca-ctaatttgctttattaggtttgcaattatttaacctaacaaattcaatct 27315386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 11454586 - 11454663
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  11454586 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaatcatttaacctaacaaattccatct 11454663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 40050873 - 40050982
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |||||||| |||||||||| |||||       | |||||||||||||    
T  40050873 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaataatttaacctaacaaatt-catctacaaaaatgcatcgcaccaatt 40050971  T
Q  322 tcattcctatc 332  Q
    | |||||||||    
T  40050972 taattcctatc 40050982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 46451493 - 46451603
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||| ||||||||||||| |||||||| ||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  46451493 tgcagtaatttaacctaattttttcccgttcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaataatgcatcgcaccaatt 46451592  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  46451593 tcattcctatc 46451603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 47503136 - 47503026
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  47503136 tgcagcaatttaacctaattttttcccgctcatttgcattattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 47503037  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  47503036 tcattcctatc 47503026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 36643212 - 36643133
Alignment:
Q  220 tatgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  36643212 tatgcagcaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatct 36643133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 52300747 - 52300809
Alignment:
Q  235 cctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccat 297  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  52300747 cctaattttttcccgctcatttactgtattaggttagcagtaatttaacctaacaaattccat 52300809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 837286 - 837176
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| |||| ||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||       | |||||||||||||    
T  837286 tgcaacaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcaccaatt 837187  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  837186 tcattcttatc 837176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 11220800 - 11220876
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||||||||| || || |||||||||||||||||||||||||||| | |||||||||| |||||    
T  11220800 tgcagcaatttaacctaatatttttcc-cttatttgctgtattaggttagcagtaattttacctaacaaatttcatct 11220876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 18094979 - 18095056
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||    
T  18094979 tgcatcaatttaacctaattttttcccgctcatttgctttattaggtttgcaatgatttaacctaacaaattccatct 18095056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 43819351 - 43819416
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||    
T  43819351 tgcagcaatttaacctaatattttcccgctcatttgctgtattaagttaacactaatttaacctaa 43819416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 38887448 - 38887377
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||||| ||||||||||    
T  38887448 tgcagcaatttaacctaattttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatt 38887377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 43017294 - 43017371
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| ||| ||| | |||||| |||||||||| |||||    
T  43017294 tgcagcaatttaacctaattttttcccgctcatttgctttattaagtttgcaattatttaacctaacaaatttcatct 43017371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 16015327 - 16015256
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| |||||||||||||||||| |||||||||| || | |||||| ||||||||||| ||||    
T  16015327 aatttaacctaattttttcccgctcatttgctttattaggttaacaattatttaacctaacaaattctatct 16015256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 21969059 - 21969013
Alignment:
Q  253 atttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  21969059 atttgctgtattaggttagcagtaatttaacctaacaaattccatct 21969013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 21991495 - 21991449
Alignment:
Q  253 atttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  21991495 atttgctgtattaggttagcagtaatttaacctaacaaattccatct 21991449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 20877299 - 20877189
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||| ||||| ||||||| ||||||| || ||||||||| |  || |||||| |||||||||| |||||       | |||||||||||||    
T  20877299 tgcagcaatttaatctaattttttccctctcatttactttattaggtttgtcgttatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 20877200  T
Q  322 tcattcctatc 332  Q
    |||||||||||    
T  20877199 tcattcctatc 20877189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 47503289 - 47503199
Alignment:
Q  242 ttttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcattcctatc 332  Q
    |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||       | ||||||||||||||||||||||||    
T  47503289 ttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatttcattcctatc 47503199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 37760520 - 37760596
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatc 298  Q
    |||| |||||||||||||  |||||||||||||||||| ||||||||| ||| | |||||| |||||||||| ||||    
T  37760520 tgcaacaatttaacctaaatttttcccgctcatttgctttattaggtttgcaattatttaacctaacaaatttcatc 37760596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 38887663 - 38887551
Alignment:
Q  222 tgcagcaatttaacctaatattttc--ccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaa 319  Q
    ||||||||||||||||||| ||||   ||||||||||||| ||||||||| ||| | |||||| |||||||||||| |||       | |||||||| ||    
T  38887663 tgcagcaatttaacctaatttttttttccgctcatttgctttattaggtttgcaattatttaacctaacaaattccttctaaaaaaatgcatcgcacaaa 38887564  T
Q  320 tttcattcctatc 332  Q
    |||||||||||||    
T  38887563 tttcattcctatc 38887551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 18094764 - 18094839
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccat 297  Q
    |||||||||||||| |||| |||||||||| ||||||| ||||||||| ||| | |||||| ||||||||| ||||    
T  18094764 tgcagcaatttaacttaattttttcccgctaatttgctttattaggtttgcaattatttaacctaacaaatcccat 18094839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 53047670 - 53047599
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    |||||||||||||| |||| |||||||||||||||||| | ||||||| ||| | |||||| ||||||||||    
T  53047670 tgcagcaatttaacataattttttcccgctcatttgctttgttaggtttgcaattatttaacctaacaaatt 53047599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 35560124 - 35560235
Alignment:
Q  222 tgcagcaatttaacctaa-tattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaat 320  Q
    |||||||||||||||||| | |||| || |||||||||| ||||||||| ||| | |||||| |||||||||| ||||        | ||||||||||||    
T  35560124 tgcagcaatttaacctaattttttttcctctcatttgctttattaggtttgcaattatttaacctaacaaatttcatccaaaaaaatgcatcgcaccaat 35560223  T
Q  321 ttcattcctatc 332  Q
    ||||||||||||    
T  35560224 ttcattcctatc 35560235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 11454228 - 11454338
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    |||| |||||||||||||| ||||||||||||| | || |||| |||| ||| | |||||| |||||||||| |||||       | |||||||||||||    
T  11454228 tgcaacaatttaacctaattttttcccgctcatctactttatttggtttgcaattatttaacctaacaaatttcatctaaaaaaatgcatcgcaccaatt 11454327  T
Q  322 tcattcctatc 332  Q
    |||||| ||||    
T  11454328 tcattcatatc 11454338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 3847848 - 3847888
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgta 262  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  3847848 tgcagcaatttaacctaatattttcgcgctcatttgctgta 3847888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 17755760 - 17755836
Alignment:
Q  223 gcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||| || |  || || ||||| ||||||| ||||||| ||||||||||||||||    
T  17755760 gcagcaatttaacctaataatttccctctaaaatgttgcattagattagcagcaatttaacctaacaaattccatct 17755836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 19057080 - 19057156
Alignment:
Q  223 gcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||||||||| |||||| || |  || || ||||| ||||||| ||||||| ||||||||||||||||    
T  19057080 gcagcaatttaacctaataatttccctctaaaatgttgcattagattagcagcaatttaacctaacaaattccatct 19057156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 38887878 - 38887806
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattc 294  Q
    ||||| ||||||||||||| |||| ||||||||||||| ||||||||| ||| | ||||||  ||||||||||    
T  38887878 tgcagtaatttaacctaatttttttccgctcatttgctttattaggtttgcaattatttaacgtaacaaattc 38887806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 24365763 - 24365834
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| |||||||||||||||| | ||||||||| ||| | |||||| ||||| |||| |||||    
T  24365763 aatttaacctaattttttcccgctcatttgatttattaggtttgcaattatttaacctaacgaatttcatct 24365834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 47519937 - 47519894
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtatta 265  Q
    ||||||||||||||||||| |||||||||||||||||| |||||    
T  47519937 tgcagcaatttaacctaattttttcccgctcatttgctttatta 47519894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 47519955 - 47520026
Alignment:
Q  228 aatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| |||||||||||||||||| ||||||| | ||| | |||||| ||||| || |||||||    
T  47519955 aatttaacctaattttttcccgctcatttgctttattagggttgcaattatttaacctaaccaagtccatct 47520026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 25917523 - 25917446
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||||||| ||||||||||| |||||| || |  || |  ||||||||||||| ||||||| ||||||||||||||||    
T  25917523 tgcagcaacttaacctaataatttccctctaaaatgttacattaggttagcagcaatttaacctaacaaattccatct 25917446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 51654074 - 51654138
Alignment:
Q  229 atttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaatt 293  Q
    |||||||||||| |||||||||||||||| | |||||||||  || | |||||| ||||||||||    
T  51654074 atttaacctaattttttcccgctcatttgttttattaggtttacaattatttaacctaacaaatt 51654138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 9240890 - 9240813
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| ||| ||||||||||| |||||| || |  ||||| ||||||||| ||  ||||||| ||||||||||||||||    
T  9240890 tgcaacaacttaacctaataatttccctctaaaatgctgcattaggttaacaacaatttaacctaacaaattccatct 9240813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 25937792 - 25937829
Alignment:
Q  262 attaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  25937792 attaggttagcagcaatttaacctaacaaattccatct 25937829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 196781 - 196672
Alignment:
Q  224 cagcaatttaacctaatattttc-ccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaattt 322  Q
    |||| |||||||||||||||||  |||||||||||||||||||||||||  ||||||||| ||||||||||||||||       | ||||||||||||||    
T  196781 cagccatttaacctaatattttttccgctcatttgctgtattaggttaggtgtaatttaacctaacaaattccatctaaaaaaatgcatcgcaccaattt 196682  T
Q  323 cattcctatc 332  Q
    || |||||||    
T  196681 cactcctatc 196672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 332
Target Start/End: Complemental strand, 163885 - 163775
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatt 321  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||| ||| | |||||| |||| |||||||||||       | |||||||||||||    
T  163885 tgcagcaatttaacctactttttttccgctcatttgctttattaggtttgcaattatttaacctaataaattccatctgaaaaaatgcatcgcaccaatt 163786  T
Q  322 tcattcctatc 332  Q
    || ||||||||    
T  163785 tcgttcctatc 163775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 102738 - 102836
Alignment:
Q  234 acctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatctnnnnnnntacatcgcaccaatttcattcctatc 332  Q
    ||||||| |||||||||||||||||| ||||| ||| ||| | |||||| ||||||||||||||||       | ||||||| ||||||||||||||||    
T  102738 acctaattttttcccgctcatttgctttattaagtttgcaattatttaacctaacaaattccatctaaaaaaatgcatcgcatcaatttcattcctatc 102836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 1018 - 958
Alignment:
Q  231 ttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaa 291  Q
    |||||||||||||||||| |||||||||| |||||||||| || |||||||| ||||||||    
T  1018 ttaacctaatattttccctctcatttgctttattaggttatcactaatttaacctaacaaa 958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 9199 - 9259
Alignment:
Q  231 ttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaa 291  Q
    |||||||||||||||||| |||||||||| |||||||||| || |||||||| ||||||||    
T  9199 ttaacctaatattttccctctcatttgctttattaggttatcactaatttaacctaacaaa 9259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 29781 - 29721
Alignment:
Q  231 ttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaa 291  Q
    |||||||||||||||||| |||||||||| |||||||||| || |||||||| ||||||||    
T  29781 ttaacctaatattttccctctcatttgctttattaggttatcactaatttaacctaacaaa 29721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 12468 - 12399
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaa 291  Q
    ||||||||||||||||||| |||| ||||||||||| | ||||||||| ||| | |||||| ||||||||    
T  12468 tgcagcaatttaacctaatttttttccgctcatttgttttattaggtttgcaattatttaacctaacaaa 12399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 13115 - 13192
Alignment:
Q  222 tgcagcaatttaacctaatattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    |||| |||||||||||||| |||| ||||||||||| | ||||||||| ||  | |||||| ||||||||||||||||    
T  13115 tgcaacaatttaacctaatttttttccgctcatttggtttattaggtttgccattatttaacctaacaaattccatct 13192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 1617 - 1539
Alignment:
Q  222 tgcagcaatttaacctaa-tattttcccgctcatttgctgtattaggttagcagtaatttaatctaacaaattccatct 299  Q
    ||||||||||||| |||| | ||||||| |||||||||| ||||| ||| ||| | |||||| |||| |||||||||||    
T  1617 tgcagcaatttaatctaaattttttcccactcatttgctttattaagtttgcaattatttaacctaataaattccatct 1539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University