View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13889_low_5 (Length: 289)
Name: NF13889_low_5
Description: NF13889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13889_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 95 - 260
Target Start/End: Complemental strand, 52246581 - 52246412
Alignment:
| Q |
95 |
aaaagtttttacttcaaagacatttatttgtcaagtgaatt----gagctataataattaagagtttattaatgaaaaacattaattcatactataatgt |
190 |
Q |
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| T |
52246581 |
aaaagtttttacttcaaagacatttatttgtcaagtgaattaattgagctataataattaagagtttattaatgaaaaacattaattcatactataatgt |
52246482 |
T |
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| Q |
191 |
tattataaagtaacaattaatcctaaatgaacagggaaggcagtgttaccagtgtaagtcaaaaggggaa |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52246481 |
tattataaagtaacaattaatcctaaatgaacagggaaggcagtgttaccagtgtaagtcaaaaggggaa |
52246412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 52246871 - 52246769
Alignment:
| Q |
1 |
atgaatttgtaggtagcacttgtaaatttactcttgtggttaatgcttattgattgttggaagaattacctacaattcttcgatgataatctaaaaaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52246871 |
atgaatttgtaggtagcacttgtaaatttactcttgtggttaatgcttattgattgttggaagaattacctacaattcttcaatgataatctaaaaaagt |
52246772 |
T |
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| Q |
101 |
ttt |
103 |
Q |
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||| |
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| T |
52246771 |
ttt |
52246769 |
T |
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