View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13889_low_6 (Length: 285)
Name: NF13889_low_6
Description: NF13889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13889_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 32617481 - 32617733
Alignment:
| Q |
15 |
tctaactaacaggacctgcatcatttgttttgtgcaactaaatttgtgctttacttgcactataactctattaactttcaaggttgttgcattattctag |
114 |
Q |
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| T |
32617481 |
tctaactaacaggacatgcatcatttgttttgtgcaactaaatttgtgctttacttgcactataactctattaactttcaaggttgttgcattattctag |
32617580 |
T |
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| Q |
115 |
aatatcaatactgggtgtaaggctgatgtggcttctgtgacattaattatgaggaatctgaaatagtcttcattcatatctcaattagaaatgtgaagaa |
214 |
Q |
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|||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32617581 |
aatatcaagattgggtgtaaggctgatgtggctcctgtgacattagttatgaggaatccgaaatagccttcattcatatctcaattagaaatgtgaagaa |
32617680 |
T |
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| Q |
215 |
aagaccaacaacacccaatttgaatatgaaaatgtataaacttaacaaaaaga |
267 |
Q |
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|||||||||| ||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
32617681 |
aagaccaacatcactcaatttgaatgtgaaaatgtataaacttaacaaaaaga |
32617733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 14605437 - 14605184
Alignment:
| Q |
15 |
tctaactaacaggacctgcatcatttgttttgtgcaactaaatttgtgctttacttgcactataactctattaactttcaaggttgttgcattattctag |
114 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14605437 |
tctaactaacaggacatgcatcatttgttttgtgcaactaaatttgtgttttacttgcactataactctatta-ctttcaaggttgttgcattattctag |
14605339 |
T |
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| Q |
115 |
aatatcaatactgggtgtaaggctgatgtggcttctgtgacatt--aattatgaggaatctgaaatagtcttcattcatatctcaattagaaatgtgaag |
212 |
Q |
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|||||||| |||||||||| |||||||||||| || ||||||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
14605338 |
aatatcaaggctgggtgtaaagctgatgtggctcctctgacattttagttatgaggaatccgaaatagccttcattcatatctcaattagaaatgtgaag |
14605239 |
T |
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| Q |
213 |
aaaagaccaacaacacccaatttgaatatgaaaatgtataaacttaacaaaaaga |
267 |
Q |
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|||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
14605238 |
aaaaaaccaacaacactcaatttgaatgggaaaatgtataaacttaacaaaaaga |
14605184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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