View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13889_low_7 (Length: 272)
Name: NF13889_low_7
Description: NF13889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13889_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 17128851 - 17129096
Alignment:
| Q |
17 |
agtatgggaaagggtgaaatatgggttaatggtcagagcattggtcgccattggccggcatatatagctcgtggtaattgtggcagctgtaattatgccg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17128851 |
agtatgggaaagggtgaaatatgggttaatggtcagagcattggtcgccattggccggcatatatagctcgtggtaattgtggcagttgtaattatgccg |
17128950 |
T |
|
| Q |
117 |
gaactttcacagataaaaaatgcagaacaaattgtggacaacccacacaaaaatggtaagaattcatacaatttactttacaacaatgatgtaagtacat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17128951 |
gaactttcacagataaaaaatgcagaacaaattgtggacaacccacacaaaaatggtaagaattcatacaatttactttacaacaatgatgtaagtacat |
17129050 |
T |
|
| Q |
217 |
ggagatcatgagatcctattttcgtctttcgacaggtatcatattc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17129051 |
ggagatcatgagatcctattttcgtctttcgacaggtatcatattc |
17129096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 5232942 - 5233138
Alignment:
| Q |
20 |
atgggaaagggtgaaatatgggttaatggtcagagcattggtcgccattggccggcatatatagctcgtggtaattgtggcagctgtaattatgccggaa |
119 |
Q |
| |
|
||||||||||||||||||||| | || | ||| ||||||||||| |||||||| ||||||||||| | ||| ||||||| ||||||||||| |||| |
|
|
| T |
5232942 |
atgggaaagggtgaaatatggataaacgatcaaagcattggtcgtcattggcctgcatatatagcacatggcaattgtgatgaatgtaattatgctggaa |
5233041 |
T |
|
| Q |
120 |
ctttcacagataaaaaatgcagaacaaattgtggacaacccacacaaaaatggtaagaattcatacaa---tttactttacaacaatgatgtaagta |
213 |
Q |
| |
|
|||| || || ||||||||| |||||||||||| |||| ||||| ||||||||||| |||||| || |||||||||| ||||||||||||| |
|
|
| T |
5233042 |
cttttactaatccaaaatgcaggacaaattgtggagaaccaacacagaaatggtaagatttcatataacgtggtactttacaataatgatgtaagta |
5233138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University