View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_high_10 (Length: 405)
Name: NF1388_high_10
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 31 - 394
Target Start/End: Complemental strand, 51919663 - 51919301
Alignment:
| Q |
31 |
ttggaaaatccaaatttcagtttaataacaaacaagaatcaccccacatggaccaatgttgttgatggcgcaatcagcgcaatataagtccatacaccca |
130 |
Q |
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| T |
51919663 |
ttggaaaatccaaatttcagtttaataacaaacaagaatcaccccacatggaccaatgttgttgatggcgcaatcagcgcaatataagtccatacaccca |
51919564 |
T |
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| Q |
131 |
tcaattttgaatcacttatggacaaaccatttttcaattccaaataaataaaaacaactaacatttatcatttttgtcaacnnnnnnnnctaacatttat |
230 |
Q |
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| T |
51919563 |
tcaattttgaatcacttatggacaaaccatttttcaattccaaataaataaaaacaactaacatttatcatttttgtcaa-aaaaaaaactaacatttat |
51919465 |
T |
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| Q |
231 |
cattgtcaacctaagaaagttttaataagatgataaaaatttcttttgccatctttggtgatctcgaatcttgggttcaaatttgaatcatggaaatgaa |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
51919464 |
cattgtcaacctaagaaagttttaataagatgataaaaatttcttttgccatctttggtgatctctaatcttgggttcgaatttgaatcatggaaatgaa |
51919365 |
T |
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| Q |
331 |
acaatgatagaacggtcaatgtaaatttggctgccaatgtgttttcatccggtttgagatatta |
394 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| |
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| T |
51919364 |
acaatgatagaacggtcaatgtgaatttggctgccaacgtgttttcatccgatttgagatatta |
51919301 |
T |
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