View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_high_11 (Length: 404)
Name: NF1388_high_11
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 104 - 399
Target Start/End: Complemental strand, 37903651 - 37903356
Alignment:
| Q |
104 |
agtttccttgttttttactcgttcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgaca |
203 |
Q |
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| T |
37903651 |
agtttccttgttttttactcgttcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgaca |
37903552 |
T |
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| Q |
204 |
ggacaatgttgcggttataattaaggctggtggttttcaaaaactgcatgatggacatttcaacgctcaagtacgttcatttgctctttgtagcacagtg |
303 |
Q |
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| T |
37903551 |
ggacaatgttgcggttataattaaggctggtggttttcaaaaactgcatgatggacatttcaacgctcaagtacgttcatttgctctttgcagcacagta |
37903452 |
T |
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| Q |
304 |
ctacaatatgttcacatttaattttctgtcatttcttctttggaatgataatttagttgtttgtttatcaaggtaatagaacctcttcatctcact |
399 |
Q |
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| T |
37903451 |
ctacaatatgttcacatttaattttctgtcatttcttctttggaatgataatttagttgtttgtttatcaaggtaatagaacctcttcttctcact |
37903356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 104 - 399
Target Start/End: Complemental strand, 37910162 - 37909867
Alignment:
| Q |
104 |
agtttccttgttttttactcgttcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgaca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910162 |
agtttccttgttttttactcgttcagcatagtatgtggccctttattaatcattgatgcctggtgatatgctgcctctgacataactgctttgtatgaca |
37910063 |
T |
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| Q |
204 |
ggacaatgttgcggttataattaaggctggtggttttcaaaaactgcatgatggacatttcaacgctcaagtacgttcatttgctctttgtagcacagtg |
303 |
Q |
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| T |
37910062 |
ggacaatgttgcggttataattaaggctggtggttttcaaaaactgcatgatggacatttcaacgctcaagtacgttcatttgctctttgcagcacagta |
37909963 |
T |
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| Q |
304 |
ctacaatatgttcacatttaattttctgtcatttcttctttggaatgataatttagttgtttgtttatcaaggtaatagaacctcttcatctcact |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37909962 |
ctacaatatgttcacatttaattttctgtcatttcttctttggaatgataatttagttgtttgtttatcaaggtaatagaacctcttcttctcact |
37909867 |
T |
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