View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_high_13 (Length: 384)
Name: NF1388_high_13
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 356
Target Start/End: Complemental strand, 1725627 - 1725283
Alignment:
| Q |
9 |
accacagagtatcaatatcgatcaatttaaaatagcagttatatagagagtatcaagtnnnnnnnnnnnnntatactaagacttaagttcaactagagag |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
1725627 |
accagagagtatcaatatcgatcaatttaaaatagcagttatatagagagtatcaagtaaaaaaaaaa---tatactaagacttaagttcaaatagagag |
1725531 |
T |
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| Q |
109 |
tatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1725530 |
tatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggag |
1725431 |
T |
|
| Q |
209 |
gattcttcttcggctttgaacttcgacatatcaatatcatccttggtggtagtagcatccacaatatttttattgtttatgattgcgtttgaacttgtag |
308 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1725430 |
gattcttcttcagctttgaacttcgacatatcaatatcatccttggtggtagtagcatccacaatatttttattttttatgattgcgtttgaacttgtag |
1725331 |
T |
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| Q |
309 |
caacatgtttagaagaatctccccatttaaaaatagcaccaattttat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1725330 |
caacatgtttagaagaatctccccatttaaaaatagcaccaattttat |
1725283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 99 - 351
Target Start/End: Complemental strand, 1745235 - 1744980
Alignment:
| Q |
99 |
aactagagagtatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatc |
198 |
Q |
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| T |
1745235 |
aactagagagtagcaatcaaattaacagcaacattgccatgaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagcccagacgaatc |
1745136 |
T |
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| Q |
199 |
ataattggaggattcttcttcggctttgaacttcgacatatcaatatcatcct---tggtggtagtagcatccacaatatttttattgtttatgattgcg |
295 |
Q |
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||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||||| | |
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| T |
1745135 |
ataattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtg |
1745036 |
T |
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| Q |
296 |
tttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaat |
351 |
Q |
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|||||||||| ||||||| | ||||||||||||| ||||| |||||||||||| |
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| T |
1745035 |
cttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaat |
1744980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 96 - 351
Target Start/End: Complemental strand, 1739898 - 1739643
Alignment:
| Q |
96 |
ttcaactagagagtatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatga |
195 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| || ||||| |||||||||||| | || |
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| T |
1739898 |
ttcaactagagagtagcaatcaaatcaacagcaacattgacatgaaaacaaaatataaaaattgaatttaaagcctaagtgataaatcaagcccagacga |
1739799 |
T |
|
| Q |
196 |
atcataattggaggattcttcttcggctttgaacttcgacatatcaatatcatccttggtggtagtagcatccacaatatttttattgtttatgattgcg |
295 |
Q |
| |
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|||||||||||||||||||||||| | || ||||| |||| |||||||| ||||||||| |||||| |||| || ||||||||||||||||||||| |
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| T |
1739798 |
atcataattggaggattcttcttccgagttaaacttagacagatcaatattatccttggtagtagtatgatcctcactatttttattgtttatgattgta |
1739699 |
T |
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| Q |
296 |
tttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaat |
351 |
Q |
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|||||||||||||||||| | ||||||||||||| |||| | |||||||||||| |
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| T |
1739698 |
cttgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaat |
1739643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 1715374 - 1715448
Alignment:
| Q |
81 |
atactaagacttaagttcaactagagagtatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaa |
155 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||| ||||||||| | || |||||||||||| ||||||||||||||| |
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| T |
1715374 |
ataccaagacataagttccactagagagtaacaatcaaattaacaataacattgacatggaaacaaaatataaaa |
1715448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 326
Target Start/End: Complemental strand, 1760914 - 1760728
Alignment:
| Q |
139 |
gaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggaggattcttcttcggctttgaacttcgacata |
238 |
Q |
| |
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||||||||||||||||| || ||||||||| | ||||| ||||||||| || | || || ||||||||||||||||||| |||||||| || | |
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| T |
1760914 |
gaaaacaaaatataaaa-ctgaatttaaagcttaagtgataaatcaagcgcataagattccgaattggaggattcttcttcaaagttgaactttgattga |
1760816 |
T |
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| Q |
239 |
tcaatatcatccttggtggtagtagcatccacaatatttttattgtttatgattgcgtttgaacttgtagcaacatgtttagaagaat |
326 |
Q |
| |
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| ||||||||| | ||| |||| | |||| |||||||||||| |||||||| ||||||||||||| ||| || | ||||||||| |
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| T |
1760815 |
tgaatatcatcttcggtataagtaagagacacattatttttattgtgtatgattgagtttgaacttgtatcaatatttgtagaagaat |
1760728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 1763993 - 1763953
Alignment:
| Q |
128 |
aacattgacatgaaaacaaaatataaaaactaaatttaaag |
168 |
Q |
| |
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||||| |||||| |||||||||||||||||| ||||||||| |
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| T |
1763993 |
aacatcgacatggaaacaaaatataaaaactgaatttaaag |
1763953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 23852609 - 23852548
Alignment:
| Q |
295 |
gtttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttat |
356 |
Q |
| |
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||||||||||||||||| || | |||||||||||||| |||| ||||||||||||||||||| |
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| T |
23852609 |
gtttgaacttgtagcaatatttgtagaagaatctcccaattttaaaatagcaccaattttat |
23852548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 3167741 - 3167680
Alignment:
| Q |
295 |
gtttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttat |
356 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| |||| | ||||||||||||||||| |
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| T |
3167741 |
gtttgaacttgtagcaacatttgtagaagaatctcctaattttagaatagcaccaattttat |
3167680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 3156496 - 3156611
Alignment:
| Q |
241 |
aatatcatccttggtggtagtagcatccacaatatttttattgtttatgattgcgtttgaacttgtagcaacatgtttagaagaatctccccatttaaaa |
340 |
Q |
| |
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||||||||| ||||| | ||||| | |||||||| ||| || | |||| ||| ||||||||||| |||||||| | ||||||||||||| |||| | | |
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| T |
3156496 |
aatatcatctttggtagaagtaggagccacaataatttgcttttctatgtttgagtttgaacttgcagcaacatttgtagaagaatctcctaattttaga |
3156595 |
T |
|
| Q |
341 |
atagcaccaattttat |
356 |
Q |
| |
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|||||||| ||||||| |
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| T |
3156596 |
atagcacctattttat |
3156611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 3138818 - 3138879
Alignment:
| Q |
295 |
gtttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttat |
356 |
Q |
| |
|
||||||| |||||||||| | | |||||||||||||| ||| ||||||||||||||||||| |
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| T |
3138818 |
gtttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttat |
3138879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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