View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_high_26 (Length: 266)
Name: NF1388_high_26
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_high_26 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 7154327 - 7154535
Alignment:
| Q |
30 |
attggtccctagagaatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7154327 |
attggtccctagagaatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagat |
7154426 |
T |
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| Q |
130 |
ccacaatattggactgatgctgagatgttcattccagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7154427 |
ccacaatattggactgatgctgagatgttcattccagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtg |
7154526 |
T |
|
| Q |
230 |
ctggaagaa |
238 |
Q |
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||||||||| |
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| T |
7154527 |
ctggaagaa |
7154535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 7131838 - 7132030
Alignment:
| Q |
35 |
tccctagagaatgcactgaattgaccatcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccaca |
134 |
Q |
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|||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||| ||||| |||| |||||| ||||||| ||||| || |
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| T |
7131838 |
tccctagagaatgcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctca |
7131937 |
T |
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| Q |
135 |
atattggactgatgctgagatgttcattccagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttgg |
227 |
Q |
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| T |
7131938 |
atattggactgatgctgagatgtttaatccagagagatttgaaggtagttctattgattttagagggaataattttgaatatcttccttttgg |
7132030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 64 - 236
Target Start/End: Original strand, 7141591 - 7141763
Alignment:
| Q |
64 |
atagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattc |
163 |
Q |
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|||||||| ||||| |||||||||||||||| ||| | |||||||| |||||| | | ||||||||| ||||||||| ||||||||||| ||| |||| |
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| T |
7141591 |
atagatgggtatgatataccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattc |
7141690 |
T |
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| Q |
164 |
cagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaag |
236 |
Q |
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| T |
7141691 |
cagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaag |
7141763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 22986347 - 22986277
Alignment:
| Q |
166 |
gagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaag |
236 |
Q |
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| T |
22986347 |
gagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaag |
22986277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 22971999 - 22971949
Alignment:
| Q |
188 |
ttgatttcaaaggaaataattttgagtatattccttttggtgctggaagaa |
238 |
Q |
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| T |
22971999 |
ttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaa |
22971949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 22946452 - 22946404
Alignment:
| Q |
188 |
ttgatttcaaaggaaataattttgagtatattccttttggtgctggaag |
236 |
Q |
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| T |
22946452 |
ttgatttcaaaggaacaaattttgagtacattccatttggtgccggaag |
22946404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 12637042 - 12636999
Alignment:
| Q |
195 |
caaaggaaataattttgagtatattccttttggtgctggaagaa |
238 |
Q |
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| T |
12637042 |
caaaggaaataattttgagtacattccttttggtgcaggaagaa |
12636999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 12609946 - 12609903
Alignment:
| Q |
195 |
caaaggaaataattttgagtatattccttttggtgctggaagaa |
238 |
Q |
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|||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
12609946 |
caaagggaataattttgagtacattccctttggtgctggaagaa |
12609903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 15885922 - 15885964
Alignment:
| Q |
196 |
aaaggaaataattttgagtatattccttttggtgctggaagaa |
238 |
Q |
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||||| |||||||||||||| |||||||||||| ||||||||| |
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| T |
15885922 |
aaagggaataattttgagtacattccttttggttctggaagaa |
15885964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 6722 - 6756
Alignment:
| Q |
204 |
taattttgagtatattccttttggtgctggaagaa |
238 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
6722 |
taattttgagtacattccttttggtgctggaagaa |
6756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 55955067 - 55954999
Alignment:
| Q |
63 |
catagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatcc |
131 |
Q |
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||||||||| ||||||||||||| ||| |||| ||||| |||||||||||||| | | ||||||||| |
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| T |
55955067 |
catagatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcc |
55954999 |
T |
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