View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1388_high_29 (Length: 251)

Name: NF1388_high_29
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1388_high_29
NF1388_high_29
[»] chr3 (3 HSPs)
chr3 (141-231)||(53841816-53841906)
chr3 (10-98)||(4706340-4706428)
chr3 (29-93)||(33762039-33762103)
[»] chr4 (3 HSPs)
chr4 (18-98)||(26393303-26393383)
chr4 (30-98)||(21526942-21527010)
chr4 (30-98)||(36254120-36254188)
[»] chr7 (1 HSPs)
chr7 (18-98)||(1512465-1512545)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 53841816 - 53841906
Alignment:
Q  141 tacttttcaacatcgtagcaaaatgtatgacctacaaattcctaaacaaatatatttttagagataagtatgatgattttaacttttaata 231  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53841816 tacttttcaacatcatagcaaaatgtatgacctacaaattcctaaacaaatatatttttagaggtaagtatgatgattttaacttttaata 53841906  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 4706428 - 4706340
Alignment:
Q  10 gcagagaaagtgactgattgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct 98  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||    
T  4706428 gcagagagagtgactgattgtaaagggggagagaaaaagcataattcagtggtttgtcactaaagatatcatgtaccctttttttatct 4706340  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 33762103 - 33762039
Alignment:
Q  29 gtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatcctttttt 93  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||    
T  33762103 gtaaagggggagagaaaaagcataatccagtggtttgtcattaaagatatcatgtaccctttttt 33762039  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 26393303 - 26393383
Alignment:
Q  18 agtgactgattgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct 98  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  26393303 agtgattggttgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatct 26393383  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 21526942 - 21527010
Alignment:
Q  30 taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  21526942 taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatct 21527010  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 36254120 - 36254188
Alignment:
Q  30 taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  36254120 taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatct 36254188  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 1512465 - 1512545
Alignment:
Q  18 agtgactgattgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatatatccttttttaatct 98  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||    
T  1512465 agtgactggctgtaaagggggagagaaaaagcataatccagtggtttgtcattaaagatattatgtatcctttttttatct 1512545  T

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