View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1388_low_1 (Length: 854)

Name: NF1388_low_1
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1388_low_1
NF1388_low_1
[»] chr3 (3 HSPs)
chr3 (30-825)||(45382480-45383276)
chr3 (253-342)||(50084778-50084869)
chr3 (511-557)||(47362558-47362604)
[»] chr6 (9 HSPs)
chr6 (506-586)||(27661703-27661783)
chr6 (506-543)||(26650237-26650274)
chr6 (506-543)||(26756205-26756242)
chr6 (502-542)||(12627824-12627864)
chr6 (506-546)||(29449688-29449728)
chr6 (431-481)||(8148268-8148318)
chr6 (434-487)||(20809178-20809231)
chr6 (506-535)||(28783014-28783043)
chr6 (488-545)||(34057962-34058019)
[»] chr1 (3 HSPs)
chr1 (238-336)||(31686728-31686828)
chr1 (188-341)||(25101927-25102080)
chr1 (497-542)||(264615-264660)
[»] chr5 (6 HSPs)
chr5 (281-335)||(27803033-27803089)
chr5 (506-545)||(28136673-28136712)
chr5 (238-342)||(41978263-41978369)
chr5 (238-306)||(16265448-16265516)
chr5 (506-543)||(645342-645379)
chr5 (497-542)||(11601688-11601733)
[»] chr7 (3 HSPs)
chr7 (506-546)||(43160491-43160531)
chr7 (497-544)||(10893872-10893919)
chr7 (506-548)||(650524-650566)
[»] chr8 (6 HSPs)
chr8 (439-481)||(14229600-14229642)
chr8 (506-546)||(32691750-32691790)
chr8 (279-332)||(40688136-40688191)
chr8 (497-545)||(41686804-41686852)
chr8 (279-342)||(31344424-31344487)
chr8 (254-332)||(7620090-7620172)
[»] chr2 (2 HSPs)
chr2 (452-548)||(9956949-9957045)
chr2 (255-342)||(9151330-9151417)
[»] chr4 (2 HSPs)
chr4 (506-556)||(10164460-10164510)
chr4 (506-544)||(28890768-28890806)


Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 30 - 825
Target Start/End: Complemental strand, 45383276 - 45382480
Alignment:
Q  30 ctcagtccacctcaaatcagttttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgttatttaaggg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383276 ctcagtccacctcaaatcagttttacttttcatgaaattaaaataaattacttttcttatcttctattgtaacatatttatcaaatgtgttatttaaggg 45383177  T
Q  130 tctatttacttcgtaaacacattttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacacatttcaaga 229  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45383176 tctatttacttcgtaaacacgttttctattttcatttatcaaatgagccattttgattgagagaagattaaatgctaactagggatgacacatttcaaga 45383077  T
Q  230 aatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagta 329  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45383076 aataacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattattcacttcaagagtcttttctcattgttaacaagtaaaagta 45382977  T
Q  330 acac-aaaatttagnnnnnnnnnnnntaagccgtaattctgtatgacaattaagtttcatagaagtggagaaagcaaaggaagtgactaattggtaaata 428  Q
    |||| |||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45382976 acacaaaaatttagaaaaataaaaaataagccgtaattctgtatgacaa-taagtttcatagaagtggagaaagcaaaggaattgactaattggtaaata 45382878  T
Q  429 atgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtc-----------tgtcaccaacatatgtgattacat 517  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||           ||||||| ||||||||||||||||    
T  45382877 atgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacat 45382779  T
Q  518 tcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttcatgtctctggtgttcatgtcagtgcttcata 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||         | |||||||||||||    
T  45382778 tcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgttcatgtctc---------tctcagtgcttcata 45382688  T
Q  618 gataatgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagattgtattctctcagcagtgtcatcagtgagc 717  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382687 gataacgaaaaatgagtggaaaaataaacttataaatcaggtatgaaataaacttacagccaaaccagattgtattctctcagcagtgtcatcagtgagc 45382588  T
Q  718 ttgtctatcttttcacaatctctttcttcactagctacagcaatcttatgaaggtaaaaaggagtaagctcttttctaacttcttcaggtatctttgata 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382587 ttgtctatcttttcacaatctctttcttcactagctacagcaatcttatgaaggtaaaaaggagtaagctcttttctaacttcttcaggtatctttgata 45382488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 50084869 - 50084778
Alignment:
Q  253 acattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaaaatttag 342  Q
    |||||||||||||||| | || | |||  ||||||||||| ||||||||||  |||||| |||||||||||||||| ||| ||||| |||||    
T  50084869 acattttcattgtttctggaaattcaaggcaattgttcacatcaagagtctcctttctccttgttaacaagtaaaattaatacaaattttag 50084778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 511 - 557
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  511 attacattcaaatatgttattttcttaaattactactgatgttgacg 557  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 506 - 586
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 586  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattac 543  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattac 543  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 542
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  502 acatatgtgattacattcaaatatgttattttcttaaatta 542  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 506 - 546
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattactac 546  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 431 - 481
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  431 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 481  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 487
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  434 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 487  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 535
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  506 atgtgattacattcaaatatgttattttct 535  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 545
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  488 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 545  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 31686828 - 31686728
Alignment:
Q  238 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 335  Q
    ||||||| || ||| |||||||||||||||  | || | ||| ||||| |||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  31686828 aaaatagttcttttgacattttcattgttttaggaaatgcaagacaatcgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 31686729  T
Q  336 a 336  Q
    |    
T  31686728 a 31686728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 341
Target Start/End: Complemental strand, 25102080 - 25101927
Alignment:
Q  188 gagagaagattaaatgctaactagggatgacacatttcaagaaatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattg 287  Q
    |||||||||| |||||||| ||||||| ||  || |||| ||||  |  ||||||||||||||   |||||||||| |||||  || ||||| |||| ||    
T  25102080 gagagaagataaaatgctagctagggacgatgcacttca-gaaaaaaataaaaatagctcattaggcattttcattatttccagaaatacaagacaaatg 25101982  T
Q  288 ttcacttcaagagtct-tttctcattgttaacaagtaaaagtaacacaaaattta 341  Q
    ||| || ||||||||| |||||| ||||||| |||||||| | ||||||| ||||    
T  25101981 ttccctccaagagtctctttctccttgttaagaagtaaaacttacacaaatttta 25101927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  497 caccaacatatgtgattacattcaaatatgttattttcttaaatta 542  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 27803033 - 27803089
Alignment:
Q  281 acaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 335  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  27803033 acaattgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 27803089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 506 - 545
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattacta 545  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 41978263 - 41978369
Alignment:
Q  238 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagag--tcttttctcattgttaacaagtaaaagtaacacaa 335  Q
    ||||||| || ||| |||||||||||||||||| || | ||| |||||| |||||||||||||  |||| |||  ||| ||||||||||||  |||||||    
T  41978263 aaaatagttcttttgacattttcattgtttccggaaatgcaaaacaattcttcacttcaagagcctcttatcttcttgctaacaagtaaaaacaacacaa 41978362  T
Q  336 aatttag 342  Q
    | |||||    
T  41978363 attttag 41978369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 16265448 - 16265516
Alignment:
Q  238 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtctttt 306  Q
    |||||||||  ||| |||||||||||||||| | || | ||| |||| |||||||||||||||||||||    
T  16265448 aaaatagctattttgacattttcattgtttctggaaatgcaagacaaatgttcacttcaagagtctttt 16265516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattac 543  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 542
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  497 caccaacatatgtgattacattcaaatatgttattttcttaaatta 542  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 546
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattactac 546  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  497 caccaacatatgtgattacattcaaatatgttattttcttaaattact 544  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 506 - 548
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattactactg 548  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 439 - 481
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  439 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 481  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 506 - 546
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattactac 546  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 40688191 - 40688136
Alignment:
Q  279 acacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaaca 332  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||||||| |||||    
T  40688191 acacaattgttcacttcaagagtctagtatctcattgttaccaagtaaaattaaca 40688136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  497 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 545  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 31344424 - 31344487
Alignment:
Q  279 acacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 342  Q
    |||||| ||||||||||||||||||| |||| |||| |  |||||||| ||||||||| |||||    
T  31344424 acacaagtgttcacttcaagagtcttatctctttgtcaggaagtaaaattaacacaaactttag 31344487  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 7620090 - 7620172
Alignment:
Q  254 cattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct----tttctcattgttaacaagtaaaagtaaca 332  Q
    |||||||||| |||  |||| | ||| ||||||||| |||||||||||||    |||||| |||||||||||||||| |||||    
T  7620090 cattttcattatttttgaaaatgcaagacaattgttaacttcaagagtctctcttttctccttgttaacaagtaaaactaaca 7620172  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 452 - 548
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  452 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 548  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 9151330 - 9151417
Alignment:
Q  255 attttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 342  Q
    |||||||| ||||||  || | ||| ||||||||||||||||||||||||||||| || ||| || |||  | ||||||||| |||||    
T  9151330 attttcatcgtttccagaaatgcaagacaattgttcacttcaagagtcttttctctttattaccatgtaggaataacacaaattttag 9151417  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 506 - 556
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 556  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 506 - 544
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  506 atgtgattacattcaaatatgttattttcttaaattact 544  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

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