View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_10 (Length: 440)
Name: NF1388_low_10
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_10 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 30 - 440
Target Start/End: Original strand, 39575806 - 39576216
Alignment:
| Q |
30 |
aggaacactccaacttatgctactagaaccgttaatactctctttgccagtttgataaaccctgtctggagcaatatattgatttgaatttggaccatca |
129 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
39575806 |
aggaacactccaacttatgctgctagaaccgttaatactctctttgccagttttataaacaatatctggagcaatatattgatttgaatttggaccatca |
39575905 |
T |
|
| Q |
130 |
gatgtatcatttgcagtgcgtggaataccaccgccaaagaagtgattcttagcgttttgtagattagttacataactgtcatctggtaaccattctctcg |
229 |
Q |
| |
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|| |||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39575906 |
gacgtatcatttgcagtgcgtggaatatcaccgtcaaaggagcaattcttagcgttttgtagattagttacatatctgtcatctggtaaccattctctcg |
39576005 |
T |
|
| Q |
230 |
ataaagtatcagttcctctatcaacggttcccccaccaacgttaaaacgatgttttgtttccaaggctcgttgtgagtttaaaccgccaatataagtaga |
329 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39576006 |
ataaagtatcagttcctctatcaacggttcccccaccgacgttaaaacgatgttttgtttccaaggctcgttgtgagtgtaaaccgccaatataagtaga |
39576105 |
T |
|
| Q |
330 |
taagcctcctcgaacaccagattcttcgtaagagaaacgtgtcattgaatcagggattaaatgaaccggaagcataaagagttctattgcgttaacaaac |
429 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39576106 |
taagcctcctcgaacaccagattctttgtaagagaaatgtggcattgaatcagggattaaatgaaccggaagcataaagagttctattgcattaacaaac |
39576205 |
T |
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| Q |
430 |
gcaaatgatga |
440 |
Q |
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||||||||||| |
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| T |
39576206 |
gcaaatgatga |
39576216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 440
Target Start/End: Original strand, 39521164 - 39521571
Alignment:
| Q |
30 |
aggaacactccaacttatgctactagaaccgttaatactctctttgccagtttgataaaccctgtctggagcaatatattgatttgaatttggaccatca |
129 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521164 |
aggaacactccaacttatgttgctagaaccgttaatactctctttgccagtttgataaaccctgtctggagcaatatattgatttgaatttggaccatca |
39521263 |
T |
|
| Q |
130 |
gatgtatcatttgcagtgcgtggaataccaccgccaaagaagtgattcttagcgttttgtagattagttacataactgtcatctggtaaccattctctcg |
229 |
Q |
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||||||||||||||||||||||||||| | || ||||| || ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
39521264 |
gatgtatcatttgcagtgcgtggaatatgaacgtcaaaggagcgattcttagcgttttgtggattagttacataactgtcatctgctaaccattctctcg |
39521363 |
T |
|
| Q |
230 |
ataaagtatcagttcctctatcaacggttcccccaccaacgttaaaacgatgttttgtttccaaggctcgttgtgagtttaaaccgccaatataagtaga |
329 |
Q |
| |
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|||| ||||| ||||||||||| || ||| |||| ||||||| ||| |||| |||||||| | ||||||||||| |||||||||| ||||||||| |
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| T |
39521364 |
ataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggtttccaacgatcgttgtgagtgtaaaccgccactataagtagt |
39521463 |
T |
|
| Q |
330 |
taagcctcctcgaacaccagattcttcgtaagagaaacgtgtcattgaatcagggattaaatgaaccggaagcataaagagttctattgcgttaacaaac |
429 |
Q |
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|||| || ||| || ||| | |||| |||||||| | |||||| ||||||||||||| || |||||||||||||| ||||| ||||||||| |
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| T |
39521464 |
taag---ccccgaccagtagaaccgatgtaattgaaacgtgctactgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaac |
39521560 |
T |
|
| Q |
430 |
gcaaatgatga |
440 |
Q |
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||||||||||| |
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| T |
39521561 |
gcaaatgatga |
39521571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 66 - 428
Target Start/End: Original strand, 39510957 - 39511313
Alignment:
| Q |
66 |
actctctttgccagtttgataaaccctgtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgcca |
165 |
Q |
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|||||||| |||||||| |||||| | |||||| |||||||| | |||||||||||||||||||| ||||||||||| | || |||| |||| | |
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| T |
39510957 |
actctcttggccagttttataaacaatatctggaccaatatatatacttgaatttggaccatcagattcatcatttgcagcgtgtttaatatcacc---a |
39511053 |
T |
|
| Q |
166 |
aagaagtgattcttagcgttttgtagattagttacataactgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccac |
265 |
Q |
| |
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||| | | |||| || |||||| ||||||||| || ||||||||| ||||||||||||| ||||| ||||| | | ||||| || | | || | |
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| T |
39511054 |
aaggaaccaatcttcgcattttgtggattagttatgtatctgtcatctcgtaaccattctcttgataatgtatcggcttctctagtgacattatcaccgc |
39511153 |
T |
|
| Q |
266 |
caacgttaaaacgatgttttgtttccaaggctcgttgtgagtttaaaccgccaatataagtagataagcctcctcgaacaccagattcttcgtaagagaa |
365 |
Q |
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| ||||||| ||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||| ||| || || |||||||| ||||| || |
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| T |
39511154 |
ctacgttaagacgatgtttcgtttccaaagctcgttgtgagtttaaaccgccactataattagataag---cctggagaactagattctttgtaagtaaa |
39511250 |
T |
|
| Q |
366 |
acgtgtcattgaatcagggattaaatgaaccggaagcataaagagttctattgcgttaacaaa |
428 |
Q |
| |
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||| || ||||||||||||||||||||| || |||| |||||||||||||||||||||||| |
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|
| T |
39511251 |
acgcaacactgaatcagggattaaatgaacggggagcacaaagagttctattgcgttaacaaa |
39511313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 274
Target Start/End: Original strand, 39543997 - 39544204
Alignment:
| Q |
67 |
ctctctttgccagtttgataaaccctgtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgccaa |
166 |
Q |
| |
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||||||||| |||||| |||||| ||| |||||||||||| ||||||||||||||| ||| |||||| ||||||||||||| ||| || | ||| |
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| T |
39543997 |
ctctctttggcagtttcataaacagcgtccggagcaatatatatatttgaatttggaccttcatatgtattatttgcagtgcgtttaatttcatctgcaa |
39544096 |
T |
|
| Q |
167 |
agaagtgattcttagcgttttgtagattagttacataactgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccacc |
266 |
Q |
| |
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|| | |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||| | ||| |
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| T |
39544097 |
aggaaccattcttagcgttttgtggattagttatataactgtcatctggtaaccattctctcgataaagtatcggtttttctatcgacagttccgctacc |
39544196 |
T |
|
| Q |
267 |
aacgttaa |
274 |
Q |
| |
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||| |||| |
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|
| T |
39544197 |
aacattaa |
39544204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 274
Target Start/End: Original strand, 39524689 - 39524908
Alignment:
| Q |
55 |
gaaccgttaatactctctttgccagtttgataaaccctgtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaa |
154 |
Q |
| |
|
||||| |||| |||| ||||| |||||| |||||| | |||||| | || |||| ||||||||||| | || ||||| |||||||||||||||| || |
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|
| T |
39524689 |
gaaccattaacactcactttggcagttttataaacaatatctggacctatgtatttatttgaatttgaatcaacagattcatcatttgcagtgcgtttaa |
39524788 |
T |
|
| Q |
155 |
taccaccgccaaagaagtgattcttagcgttttgtagattagttacataactgtcatctggtaaccattctctcgataaagtatcagttcctctatcaac |
254 |
Q |
| |
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|| |||| ||||| | ||||||||||||||| ||| ||||| ||| ||||||||||||||||||||||| |||| ||||||||| |||||| ||| |
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| T |
39524789 |
tatcaccttcaaaggaaccattcttagcgttttggggatcagttatatatctgtcatctggtaaccattctcttgatagtgtatcagtttctctattaac |
39524888 |
T |
|
| Q |
255 |
ggttcccccaccaacgttaa |
274 |
Q |
| |
|
|||| |||||||| |||| |
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|
| T |
39524889 |
aattccgccaccaacattaa |
39524908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 39580415 - 39580543
Alignment:
| Q |
93 |
gtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgccaaagaagtgattcttagcgttttgtaga |
192 |
Q |
| |
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||||||| |||||| | |||||||||||||||||||||| |||| |||||||||| |||| |||| |||||||| |||||||||||| ||| || |
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| T |
39580415 |
gtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtttaatatcacctccaaagaaaccattcttagcgttatgtgga |
39580514 |
T |
|
| Q |
193 |
ttagttacataactgtcatctggtaacca |
221 |
Q |
| |
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||||| | |||||||||||||||||||| |
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|
| T |
39580515 |
ttagtgatgtaactgtcatctggtaacca |
39580543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 39525001 - 39525067
Alignment:
| Q |
373 |
attgaatcagggattaaatgaaccggaagcataaagagttctattgcgttaacaaacgcaaatgatg |
439 |
Q |
| |
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||||| || |||||||||||||| || |||||||||||||||||||| ||| |||| |||||||||| |
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| T |
39525001 |
attgagtcggggattaaatgaacagggagcataaagagttctattgcattagcaaaggcaaatgatg |
39525067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 39580719 - 39580756
Alignment:
| Q |
403 |
ataaagagttctattgcgttaacaaacgcaaatgatga |
440 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
39580719 |
ataaagagttccattgcattaacaaacgcaaatgatga |
39580756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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