View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1388_low_12 (Length: 411)

Name: NF1388_low_12
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1388_low_12
NF1388_low_12
[»] chr7 (2 HSPs)
chr7 (23-411)||(37903061-37903449)
chr7 (23-411)||(37909572-37909960)


Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 23 - 411
Target Start/End: Original strand, 37903061 - 37903449
Alignment:
Q  23 atcatcaggggaacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37903061 atcatcaggggaacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgc 37903160  T
Q  123 aaaagaggaattgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37903161 aaaagaggaattgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcat 37903260  T
Q  223 cttctcttccaatctttttaacgtctttgttacacactcttgagaaggctgcaagtcaaacaacaatgataatgaaactaaattgattataaattagtga 322  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37903261 cttctcttccaatctttttaacgtctttgttacacactcttgagtaggctgcaagtcaaacaacaatgataatgaaactaaattgattataaattagtga 37903360  T
Q  323 gaagaagaggttctattaccttgataaacaaacaactaaattatcattccaaagaagaaatgacagaaaattaaatgtgaacatattgt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37903361 gaagaagaggttctattaccttgataaacaaacaactaaattatcattccaaagaagaaatgacagaaaattaaatgtgaacatattgt 37903449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 23 - 411
Target Start/End: Original strand, 37909572 - 37909960
Alignment:
Q  23 atcatcaggggaacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37909572 atcatcaggggaacataaatgtgcaagagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgc 37909671  T
Q  123 aaaagaggaattgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37909672 aaaagaggaattgatagaataatcaaaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcat 37909771  T
Q  223 cttctcttccaatctttttaacgtctttgttacacactcttgagaaggctgcaagtcaaacaacaatgataatgaaactaaattgattataaattagtga 322  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37909772 cttctcttccaatctttttaacgtctttgttacacactcttgagtaggctgcaagtcaaacaacaatgataatgaaactaaattgattataaattagtga 37909871  T
Q  323 gaagaagaggttctattaccttgataaacaaacaactaaattatcattccaaagaagaaatgacagaaaattaaatgtgaacatattgt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37909872 gaagaagaggttctattaccttgataaacaaacaactaaattatcattccaaagaagaaatgacagaaaattaaatgtgaacatattgt 37909960  T

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