View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_15 (Length: 402)
Name: NF1388_low_15
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 332
Target Start/End: Complemental strand, 11902897 - 11902594
Alignment:
| Q |
30 |
ttattggtgctgtacttttttaaatcatcacaattcctcgctttgaatcttcacactccttcctacttcaaaaataatnnnnnnn-tctctgcattcctt |
128 |
Q |
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| T |
11902897 |
ttattggtgctgcacttttttaaatcatcacaattcctcgctttgaatcttcacactccttcctacttaaaaaaaaataaaaaaaatctctgcattcctt |
11902798 |
T |
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| Q |
129 |
ccttgttcccactttgcattttcacaaaattctcgtaggaaaaaatgtctcactcatatctattcaaattcataataatcggtgacataggagttggaaa |
228 |
Q |
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| T |
11902797 |
ccttgttcccactttgcattttcacaaaattctcgtaggaaaaaatgtctcactcatatctattcaaattcataataatcggtgacataggagtcggaaa |
11902698 |
T |
|
| Q |
229 |
atcatgtcttctatttcgattcacagacaacagctttaaacccattcatgacataacaataggtgtcgaattcggcatcaaatttatcaacatcaagaat |
328 |
Q |
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| T |
11902697 |
atcatgtcttctatttcgattcacagacaacagctttaaacccatccatgacataacaataggtgtcgaattcggcatcaaatttatcaacatcaagaat |
11902598 |
T |
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| Q |
329 |
aatc |
332 |
Q |
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|||| |
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| T |
11902597 |
aatc |
11902594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 140 - 300
Target Start/End: Original strand, 11916819 - 11916980
Alignment:
| Q |
140 |
ctttgcattttcacaa-aattctcgtaggaaaaaatgtctcactcatatctattcaaattcataataatcggtgacataggagttggaaaatcatgtctt |
238 |
Q |
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| T |
11916819 |
ctttgcttcttcacaacaattctcgtagaaaaaaatgtctcgctcatatgccttcaaatacataataatcggcgatattggagtcggaaaatcatgtctt |
11916918 |
T |
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| Q |
239 |
ctatttcgattcacagacaacagctttaaacccattcatgacataacaataggtgtcgaatt |
300 |
Q |
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| T |
11916919 |
ctacttcaattcacagacaaccgctttcaacgcttccacgacacaacaattggtgtcgaatt |
11916980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 300
Target Start/End: Complemental strand, 11931538 - 11931377
Alignment:
| Q |
140 |
ctttgcattttcacaa-aattctcgtaggaaaaaatgtctcactcatatctattcaaattcataataatcggtgacataggagttggaaaatcatgtctt |
238 |
Q |
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|||||| | ||||||| ||||||| ||| |||||||||||| ||||||| ||||||| |||||||||||| || | ||||| ||||||||||||||| |
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| T |
11931538 |
ctttgcttattcacaacaattctcatagaaaaaaatgtctcgctcatatgccttcaaatacataataatcggcgatactggagtcggaaaatcatgtctt |
11931439 |
T |
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| Q |
239 |
ctatttcgattcacagacaacagctttaaacccattcatgacataacaataggtgtcgaatt |
300 |
Q |
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| T |
11931438 |
ctacttcaattcacagacaaccgctttcaacgcttccacgacgtaacaattggtgtcgaatt |
11931377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 330
Target Start/End: Original strand, 11912990 - 11913150
Alignment:
| Q |
170 |
aaaatgtctcactcatatctattcaaattcataataatcggtgacataggagttggaaaatcatgtcttctatttcgattcacagacaacagctttaaac |
269 |
Q |
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||||||||| ||||||| | ||| | | |||||||||||| |||| || ||| ||||||||||| ||||| ||| ||||||||||||| | ||| ||| |
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| T |
11912990 |
aaaatgtcttgctcatatatcttcgactacataataatcggcgacaccggtgttagaaaatcatgtattctacttcaattcacagacaaccgttttcaac |
11913089 |
T |
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| Q |
270 |
ccattcatgacataacaataggtgtcgaattcggcatcaaatttatcaacatcaagaataa |
330 |
Q |
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| || || ||||||||||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
11913090 |
caatccacaacataacaataggtgtcgaattcggtgtcaaaataatcaacatcaagaataa |
11913150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 11907526 - 11907381
Alignment:
| Q |
121 |
cattccttccttgttcccactttgcattttcacaa-aattctcgtaggaaaaaatgtctcactcatatctattcaaattcataataatcggtgacatagg |
219 |
Q |
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||||| |||||||||||| |||||| ||||||||| || | |||||| |||| ||||||||||| ||| ||||||| |||||||||||| |||| || |
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| T |
11907526 |
cattcgttccttgttccctctttgctttttcacaacaaatatcgtagaaaaacatgtctcactcctatgccttcaaatacataataatcggcgacactgg |
11907427 |
T |
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| Q |
220 |
agttggaaaatcatgtcttctatttcgattcacagacaacagcttt |
265 |
Q |
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||| ||||||||||||||| || ||| ||||| |||||| ||||| |
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| T |
11907426 |
agtcggaaaatcatgtcttgtacttcaattcatggacaaccgcttt |
11907381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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