View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1388_low_16 (Length: 385)
Name: NF1388_low_16
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_16 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0284 (1 HSPs) |
| | |
|
| [»] scaffold0119 (1 HSPs) |
| | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 83 - 363
Target Start/End: Complemental strand, 41754802 - 41754526
Alignment:
| Q |
83 |
atactagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatatt |
182 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41754802 |
atactagcatggacacccgtgccaagcacgggctagaatttcgtcatccttaagggagagaatgttgtaaagtattaaatgtatgttaaatctcaatatt |
41754703 |
T |
|
| Q |
183 |
ggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcact |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
41754702 |
ggataaaatattggaggttgaagagtaaataagtgaaaataaactcatatacttaagacttta----aattttggatgaagatgtaacatcattatcact |
41754607 |
T |
|
| Q |
283 |
cgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41754606 |
cgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctg |
41754526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 378
Target Start/End: Complemental strand, 3395877 - 3395590
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
184 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||| ||||| | || ||||||||| || | ||| || ||| ||||||| |||| ||||| |
|
|
| T |
3395877 |
actagtatggacacccgtgccaagcacgggctagaattacgtcattttcaatggagagaatat-gtgatatatcaagtgtcagttaaatatcaacattgg |
3395779 |
T |
|
| Q |
185 |
ataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactcg |
284 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| || ||| ||| ||||| ||| | ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
3395778 |
ataaaatattggaggttgaagaacaaataagtaaaaaataaatcatatacttaagtcttaa----aattttggatgaaaatgtaacatcattttcacttg |
3395683 |
T |
|
| Q |
285 |
tgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaatattcttgg |
378 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||| || |||||||||| |||||||||||||||||| | ||||| ||| |||| |
|
|
| T |
3395682 |
tgtgattgctctttctgcaacgtgtcgattcacacaagtgttgtct-ccccataagttccaatggtgatatcatatccgcttcaacatttttgg |
3395590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 359
Target Start/End: Complemental strand, 5789244 - 5789028
Alignment:
| Q |
141 |
agaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaactcacatatttaag |
239 |
Q |
| |
|
|||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||| | | ||||| |
|
|
| T |
5789244 |
agaatattgtaatgtatcaagtgtcagttaaatctcaatattggataaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaag |
5789145 |
T |
|
| Q |
240 |
actttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtc--gattcacacaagcgttggctcccccat |
337 |
Q |
| |
|
||| || || ||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
5789144 |
tcttgaagtt----ttggatgaagatgtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggct-ccccat |
5789050 |
T |
|
| Q |
338 |
aagtctcaatggtgatatcata |
359 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
5789049 |
aagtctcaatgttgatatcata |
5789028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 28136903 - 28136943
Alignment:
| Q |
30 |
ggtgccgcggtggtttggtggtggcagatctaaggttcact |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28136903 |
ggtgccgcggtggtttggtggtggcagatctaaggttcact |
28136943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 85 - 369
Target Start/End: Complemental strand, 23142223 - 23141942
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
184 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23142223 |
actagcatggacacccgtgccaagcacgggctagaatttcgtcatccttaagggagagaatattttaaagtattaaatgtatgttaaatctcaatattgg |
23142124 |
T |
|
| Q |
185 |
ataaaatattggaggttgaagagtaaataagtgaaaat-aaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
23142123 |
ataaaatattggaggttgaagagtaaataagtgaaaataaaactcaaatacttaagacttta----aattttggatgaagatgtaacatcattatcactc |
23142028 |
T |
|
| Q |
284 |
gtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaa |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23142027 |
gtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctgcttcaa |
23141942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 83 - 378
Target Start/End: Complemental strand, 42797713 - 42797423
Alignment:
| Q |
83 |
atactagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatatt |
182 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42797713 |
atactagcatggacacccgtgccaagtacgggctaaaatttcgtcatccttaagggagagaatattgtaaagtattaaatgtatgttaaatcttaatatt |
42797614 |
T |
|
| Q |
183 |
ggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcact |
282 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||| |||||||||||||| |
|
|
| T |
42797613 |
ggataaaatattggaggttggagagtaaataagtgaaaataaactcttatacttaagacttta----aattttggatgaagatgtgacatcattatcact |
42797518 |
T |
|
| Q |
283 |
cgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaatattcttgg |
378 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||| ||| || | ||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
42797517 |
cgtgtgattgctctttctgcaatgtgtcgattcacacaagtgtttgct-cctcgtaagtctcaatggtgatatcatatctgcttcaacatttttgg |
42797423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 82 - 378
Target Start/End: Original strand, 13756200 - 13756485
Alignment:
| Q |
82 |
tatactagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatat |
181 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13756200 |
tatactagcatggacacccgtgccaagcacgggctaaaatttcgtcatctctaagggagagaatattgtaaagtattaaatatatgttaaatctcaatat |
13756299 |
T |
|
| Q |
182 |
tggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcac |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
13756300 |
tggataaaatattggaggttgaagagtaaataagtgaaaataaactcatat-------acttta----aattttggatgaagatgtaacatcattatcac |
13756388 |
T |
|
| Q |
282 |
tcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaatattcttgg |
378 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
13756389 |
ttgtgtgattgctctttctgcaatgtgtcgattcacacaagcgttggcttccacataagtcccaatggtgatatcatatctgcttcaacatttttgg |
13756485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 296
Target Start/End: Complemental strand, 10901753 - 10901547
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatg-tatgttaaatctcaatattg |
183 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||||||||||| ||| || |||||||||||||| |||| || || | |||||||||||| |||| |
|
|
| T |
10901753 |
actagtatagacacctgtgccaagcacgggctagaatttcgtcatcctcaatggagagaatattgtaatgtatcaagtgttcagttaaatctcaacattg |
10901654 |
T |
|
| Q |
184 |
gataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactc |
283 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||| || | | ||||||||| | ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
10901653 |
gataaaatattggaggttgaagaacatataaatgaaaaataaattatatatttaagtc------ttaattttggatgaagatgtaacatcattttcactt |
10901560 |
T |
|
| Q |
284 |
gtgtgattgctct |
296 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
10901559 |
gtgcgattgctct |
10901547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 180 - 360
Target Start/End: Complemental strand, 21589165 - 21588990
Alignment:
| Q |
180 |
attggataaaatattggaggttgaagagtaaataagtg-aaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattat |
278 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |||| ||||||| || | ||| ||| ||||| ||| | ||| ||| |||||||| | |
|
|
| T |
21589165 |
attggataaaatattggaggtcgaagaacaaataagtggaaaaaaaactca--tactaaagccttaaaatt----ttgaaagaagatgcgacatcattct |
21589072 |
T |
|
| Q |
279 |
cactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
360 |
Q |
| |
|
||| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
21589071 |
cacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatat |
21588990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 41529124 - 41529080
Alignment:
| Q |
84 |
tactagcatagacacccgtgccaagcacgggctggaatttcgtca |
128 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41529124 |
tactagtatggacacccgtgccaagcacgggctagaatttcgtca |
41529080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 15278161 - 15278111
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaa |
135 |
Q |
| |
|
|||||||| || || ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
15278161 |
actagcatggaaactcgtgccaagcacgggctagaatttcgtcaaacttaa |
15278111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 15458530 - 15458480
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaa |
135 |
Q |
| |
|
|||||||| || || ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
15458530 |
actagcatggaaactcgtgccaagcacgggctagaatttcgtcaaacttaa |
15458480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 18432569 - 18432525
Alignment:
| Q |
84 |
tactagcatagacacccgtgccaagcacgggctggaatttcgtca |
128 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
18432569 |
tactagtatggacacccgtgccaagcacgggctagaattttgtca |
18432525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 85 - 368
Target Start/End: Original strand, 50814456 - 50814733
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
184 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50814456 |
actagcatggacacccgtgccaagcacgggctagaatttcgtcatccttaagggagagaatgttgtaaagtattaaatgtatgttaaatctcaatattgg |
50814555 |
T |
|
| Q |
185 |
ataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactcg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50814556 |
ataaaatattggaggttgaagagtaaataagtgaaaataaa--cacatacttaagacttta----aattttggatgaagatgtaacatcattatcactcg |
50814649 |
T |
|
| Q |
285 |
tgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttca |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
50814650 |
tgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttca |
50814733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 85 - 378
Target Start/End: Original strand, 13228353 - 13228641
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
184 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||||||||| | || |||||||||||| | |||| || ||| |||||| |||| ||||| |
|
|
| T |
13228353 |
actagtatggacacccgtgccaagcacgggctagaatttcgtcattttcaatggagagaatattgtgatgtatcaagtgtcacttaaatatcaacattgg |
13228452 |
T |
|
| Q |
185 |
ataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactcg |
284 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| || ||| || ||||| ||| ||||| ||| ||||||||||||||||||| ||||| | |
|
|
| T |
13228453 |
ataagatattggaggttgaagaacaaataagtgaaaaataaatcatatccttaagtcttaaaatt----ttgaatgaaaatgtaacatcattttcacttg |
13228548 |
T |
|
| Q |
285 |
tgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaatattcttgg |
378 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||| ||||||| |||||||||| ||||||||||||||||||| | ||||| ||| |||| |
|
|
| T |
13228549 |
tgtgattgctctttctgcaatgcgttgattcacacaagtgttggct-ccccataagtttcaatggtgatatcatatccgcttcaacatttttgg |
13228641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 360
Target Start/End: Original strand, 39974599 - 39974775
Alignment:
| Q |
180 |
attggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatc |
279 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| ||| ||| | |||| | ||| ||| ||||| ||||| ||| ||| |||||||| || |
|
|
| T |
39974599 |
attggataaaatattggaggtcgaagaacaaataagtggaaaaaaaaactcatactaaagccttaaaatt----ttggaagaagatgcgacatcattctc |
39974694 |
T |
|
| Q |
280 |
actcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
360 |
Q |
| |
|
|| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
39974695 |
acctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatat |
39974775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 360
Target Start/End: Complemental strand, 49953374 - 49953180
Alignment:
| Q |
168 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtg------aaaataaactcacatatttaagactttaaattaattttggatga |
261 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||| ||||||||| |||| ||||||| ||| | ||| ||| | |||||||||||| |
|
|
| T |
49953374 |
ttaaatctcatcattggataaaatattagaggtcgaagaacaaataagtgaaagaaaaaaaaaactcatatactaaagccttaa----aattttggatga |
49953279 |
T |
|
| Q |
262 |
aaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
360 |
Q |
| |
|
| | | |||||||| ||||| ||||| ||| | ||| |||||||| |||| ||||||||| |||| ||||||| |||||| ||| ||||||||||||| |
|
|
| T |
49953278 |
agacgcgacatcattctcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatat |
49953180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 281679 - 281816
Alignment:
| Q |
168 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgt |
267 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||||| ||| | ||| ||| | ||||||||||||| ||| |
|
|
| T |
281679 |
ttaaatctcatcattggataaaatactggaggtcgaagaacaaataagtgaaaaaaaactcatatactaaagccttaa----aattttggatgaagatgc |
281774 |
T |
|
| Q |
268 |
aacatcattatcactcgtgtgattgctctttatgcaatgtgt |
309 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||| |||||||||| |
|
|
| T |
281775 |
gacatcattctcacttgtgtggttgttttttctgcaatgtgt |
281816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 24183845 - 24183795
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaa |
135 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| | |||| ||||| |
|
|
| T |
24183845 |
actagcatggacacccgtgccaagcacgggctagaattccatcaaacttaa |
24183795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 42758007 - 42757967
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcg |
125 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
42758007 |
actagtatggacacccgtgccaagcacgggctagaatttcg |
42757967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 85 - 378
Target Start/End: Complemental strand, 50332353 - 50332064
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
184 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||| ||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
50332353 |
actaggatggacactcgtgccaagcatgggctagaatttcgtcatccttaagggagagaatattgtaatgtattgaatgtatgttaaatctcaatattgg |
50332254 |
T |
|
| Q |
185 |
ataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactcg |
284 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50332253 |
ataaaatattagaggttgaagagtaaataagtgaaaataaactcatatacttaatacttta----aattttggatgaagatgtaacatcattatcactcg |
50332158 |
T |
|
| Q |
285 |
tgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaatattcttgg |
378 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
50332157 |
tgtgattgctctttctgcaatgtgacgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttcaacatttttgg |
50332064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 381
Target Start/End: Complemental strand, 12746321 - 12746129
Alignment:
| Q |
184 |
gataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactc |
283 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||| ||||||| ||| || || ||||| |||||||||||| ||| |||||||| ||||| |
|
|
| T |
12746321 |
gataaaatattggagatcgaagaacaaataagtgaaaaaaaactcatataccaaa-accttaaa---attttggatgaagatgcgacatcattctcactt |
12746226 |
T |
|
| Q |
284 |
gtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaatattcttggaga |
381 |
Q |
| |
|
||||||||||| | | |||||||| |||| ||||||||| |||| |||||| ||| || ||||||||||||||||| | ||||| ||| ||||||| |
|
|
| T |
12746225 |
gtgtgattgct-tctctgcaatgtatcgaatcacacaagtgttgtctcccctgtaattcccaatggtgatatcatatacgcttcaacatttttggaga |
12746129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 360
Target Start/End: Original strand, 36095931 - 36096041
Alignment:
| Q |
250 |
aattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatgg |
349 |
Q |
| |
|
||||||||| ||| ||| |||||||| |||| |||| ||| | ||| ||||||||||||| ||||||||| |||| |||||| || ||| |||||| |
|
|
| T |
36095931 |
aattttggaagaagatgcgacatcattctcacctttgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtatcccccgtatgtcccaatgg |
36096030 |
T |
|
| Q |
350 |
tgatatcatat |
360 |
Q |
| |
|
||||||||||| |
|
|
| T |
36096031 |
tgatatcatat |
36096041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 17763829 - 17763873
Alignment:
| Q |
84 |
tactagcatagacacccgtgccaagcacgggctggaatttcgtca |
128 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17763829 |
tactagtatggacacccgtgccaagcacgggctagaatttcgtca |
17763873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 19065149 - 19065193
Alignment:
| Q |
84 |
tactagcatagacacccgtgccaagcacgggctggaatttcgtca |
128 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19065149 |
tactagtatggacacccgtgccaagcacgggctagaatttcgtca |
19065193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 6435579 - 6435629
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaa |
135 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
6435579 |
actagcatggaaacccgtgccaagcacgggctagaattccgtcaaacttaa |
6435629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 42400722 - 42400680
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtc |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
42400722 |
actagcatggacacccgtgccaagcacgggctagaatgtcgtc |
42400680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 50239320 - 50239354
Alignment:
| Q |
94 |
gacacccgtgccaagcacgggctggaatttcgtca |
128 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50239320 |
gacacccgtgccaagcacgggctagaatttcgtca |
50239354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 20788204 - 20788248
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaa |
129 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || ||||||||| |
|
|
| T |
20788204 |
actagcattgaaacccgtgccaagcacgggctagactttcgtcaa |
20788248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 85 - 294
Target Start/End: Complemental strand, 15721643 - 15721438
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
184 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15721643 |
actagcatggacactcgtgccaagcacaggctagaatttcgtcatccttaagggagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
15721544 |
T |
|
| Q |
185 |
ataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactcg |
284 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15721543 |
ataaaatattggaggttgaatagtaaataagtgaaaataaactcatatacttaagacttta----aattttggatgaagatgtaacatcattatcactcg |
15721448 |
T |
|
| Q |
285 |
tgtgattgct |
294 |
Q |
| |
|
|||||||||| |
|
|
| T |
15721447 |
tgtgattgct |
15721438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 29502558 - 29502513
Alignment:
| Q |
83 |
atactagcatagacacccgtgccaagcacgggctggaatttcgtca |
128 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29502558 |
atactagtatggacacccgtgccaagcacgggctagaatttcgtca |
29502513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 17475057 - 17475014
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtca |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
17475057 |
actagcatggacacccgtgccaagcacgggctagaattttgtca |
17475014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 17578157 - 17578200
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtca |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
17578157 |
actagcatggacacccgtgccaagcacgggctagaattttgtca |
17578200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 85 - 294
Target Start/End: Original strand, 1594479 - 1594684
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
184 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1594479 |
actagcatggacactcgtgccaagcacaggctagaatttcgtcatccttaagggagagaatattgtaaagtattaaatgtatgttaaatctcaatattgg |
1594578 |
T |
|
| Q |
185 |
ataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactcg |
284 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1594579 |
ataaaatattggaggttgaatagtaaataagtgaaaataaactcatatacttaagacttta----aattttggatgaagatgtaacatcattatcactcg |
1594674 |
T |
|
| Q |
285 |
tgtgattgct |
294 |
Q |
| |
|
|||||||||| |
|
|
| T |
1594675 |
tgtgattgct |
1594684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 369
Target Start/End: Original strand, 1599542 - 1599622
Alignment:
| Q |
289 |
attgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctggttcaa |
369 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||| |
|
|
| T |
1599542 |
attgctctttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaa |
1599622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 361
Target Start/End: Original strand, 26894729 - 26894835
Alignment:
| Q |
254 |
ttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgat |
353 |
Q |
| |
|
||||||||| ||| ||||| ||| ||| | |||||||| |||||| |||||||||| |||||||||| ||||||| ||||||||||| |||| |||| |
|
|
| T |
26894729 |
ttggatgaagatgaaacat-attctcatttgtgtgatttctctttctgcaatgtgtgtattcacacaactgttggctaccccataagtcccaataatgat |
26894827 |
T |
|
| Q |
354 |
atcatatc |
361 |
Q |
| |
|
|| ||||| |
|
|
| T |
26894828 |
ataatatc |
26894835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 26894613 - 26894725
Alignment:
| Q |
94 |
gacacccgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatat |
193 |
Q |
| |
|
|||||||||| ||| ||| ||| ||||||||||| | || | |||||||||||| | ||| || ||| |||||| ||||| |||||||||||||| |
|
|
| T |
26894613 |
gacacccgtgtcaatcacaagctagaatttcgtcatctttgaaggagagaatattgtgatgtaacaactgttagttaaacctcaacattggataaaatat |
26894712 |
T |
|
| Q |
194 |
tggaggttgaaga |
206 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26894713 |
tggaggttgaaga |
26894725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 28365452 - 28365494
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtc |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
28365452 |
actagcatggacacccgtgccaagcacgggctagaatgtcgtc |
28365494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 20872244 - 20872285
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgt |
126 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
20872244 |
actagcttagaaacccgtgccaagcacgggctagaatttcgt |
20872285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 33350622 - 33350577
Alignment:
| Q |
84 |
tactagcatagacacccgtgccaagcacgggctggaatttcgtcaa |
129 |
Q |
| |
|
||||||||| || |||||||||||||||||||| || ||||||||| |
|
|
| T |
33350622 |
tactagcatggaaacccgtgccaagcacgggctagactttcgtcaa |
33350577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 359
Target Start/End: Complemental strand, 33617 - 33401
Alignment:
| Q |
141 |
agaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaa-taaactcacatatttaag |
239 |
Q |
| |
|
|||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||| | | ||||| |
|
|
| T |
33617 |
agaatattgtaatgtatcaagtgtcagttaaatctcaatattggataaaacattggaggttgaagaacaaataagtgaaaaatagacttattcagttaag |
33518 |
T |
|
| Q |
240 |
actttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtc--gattcacacaagcgttggctcccccat |
337 |
Q |
| |
|
||| || || ||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
33517 |
tcttgaagtt----ttggatgaagatgtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggct-ccccat |
33423 |
T |
|
| Q |
338 |
aagtctcaatggtgatatcata |
359 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
33422 |
aagtctcaatgttgatatcata |
33401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 361
Target Start/End: Complemental strand, 43387509 - 43387253
Alignment:
| Q |
100 |
cgtgccaagcacgggctggaatttcgtcaaccttaagaaagagaatattgtaaagtattaaatgtatgttaaatctcaatattggataaaatattggagg |
199 |
Q |
| |
|
||||||||||||||| | ||||||||| | ||| || | |||||||||||| | | || || ||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
43387509 |
cgtgccaagcacgggttagaatttcgttatcctcaatatagagaatattgtgatgcatcaagtgtcaattaaatttcaacgttggataaaatattggagg |
43387410 |
T |
|
| Q |
200 |
ttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgtaacatcattatcactcgtgtgattgctcttta |
299 |
Q |
| |
|
||||||| | ||||||||||| || ||| ||| ||||| ||| | ||||||||||||| ||||||||| ||| ||||| ||||||||||| ||| |
|
|
| T |
43387409 |
ttgaagaacatataagtgaaaaataaatcatatacttaagtcttaa----aattttggatgaagatgtaacattattttcacttgtgtgattgctttttc |
43387314 |
T |
|
| Q |
300 |
tgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatc |
361 |
Q |
| |
|
| || |||||| ||||||||||| ||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
43387313 |
tacattgtgtcaattcacacaagtgttggat-ccccataagtcccaatggtgatatcatatc |
43387253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 30002105 - 30002059
Alignment:
| Q |
81 |
atatactagcatagacacccgtgccaagcacgggctggaatttcgtc |
127 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
30002105 |
atatactagcatggacactcgtgccaagcacgggctagaatgtcgtc |
30002059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 19066074 - 19066029
Alignment:
| Q |
84 |
tactagcatagacacccgtgccaagcacgggctggaatttcgtcaa |
129 |
Q |
| |
|
||||||||| || |||||||||||||||||||| || ||||||||| |
|
|
| T |
19066074 |
tactagcatggaaacccgtgccaagcacgggctagactttcgtcaa |
19066029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 19113964 - 19113919
Alignment:
| Q |
84 |
tactagcatagacacccgtgccaagcacgggctggaatttcgtcaa |
129 |
Q |
| |
|
||||||||| || |||||||||||||||||||| || ||||||||| |
|
|
| T |
19113964 |
tactagcatggaaacccgtgccaagcacgggctagactttcgtcaa |
19113919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 8313153 - 8313197
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaa |
129 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
8313153 |
actagcatggacatccgtgccaagcacgggctagaattccgtcaa |
8313197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 250 - 361
Target Start/End: Original strand, 14347 - 14458
Alignment:
| Q |
250 |
aattttggatgaaaatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatgg |
349 |
Q |
| |
|
||||||||||||| ||||||||| | | ||||| |||||||||| |||| | |||||||| |||||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
14347 |
aattttggatgaagatgtaacattagtctcacttgtgtgattgccctttcttcaatgtgttgattcacacaagtgttggctcctccataagtcttaatgg |
14446 |
T |
|
| Q |
350 |
tgatatcatatc |
361 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14447 |
tgatatcatatc |
14458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 168 - 360
Target Start/End: Complemental strand, 33014218 - 33014030
Alignment:
| Q |
168 |
ttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactcacatatttaagactttaaattaattttggatgaaaatgt |
267 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |||||| |||||| ||||||| ||| | ||| ||| | |||||| |||||||||| |
|
|
| T |
33014218 |
ttaaatctcatcattggataaaatattggaggtcgaagaacaaataaatgaaaaaaaactcatatactaaagtcttaa----aattttagatgaaaatgc |
33014123 |
T |
|
| Q |
268 |
aacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatat |
360 |
Q |
| |
|
|||||||| ||||| ||||| ||| | ||| ||||||||||||| ||||||||| |||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
33014122 |
gacatcattctcacttgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccatgtaagtcccaatggtgatatcatat |
33014030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 38016182 - 38016086
Alignment:
| Q |
264 |
atgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatc |
361 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| |||||| | |||||||||||||| | ||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
38016182 |
atgtaacatcattattacttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggct-ccccataagtcccaatggcgatatcatatc |
38016086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 50548 - 50473
Alignment:
| Q |
154 |
gtattaaatgtatgttaaatctcaatattggataaaatattggaggttgaagagtaaataagtgaaaataaactca |
229 |
Q |
| |
|
||||||| ||| |||||||||| | |||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
50548 |
gtattaagtgtgagttaaatctccacattggataaaatattggaggttagagaataaataagtgaaaaaaaactca |
50473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0284 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 3091 - 3042
Alignment:
| Q |
80 |
aatatactagcatagacacccgtgccaagcacgggctggaatttcgtcaa |
129 |
Q |
| |
|
|||| ||||| || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3091 |
aatacactagtatggacacccgtgccaagcacgggctagaatttcgtcaa |
3042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 40351 - 40396
Alignment:
| Q |
81 |
atatactagcatagacacccgtgccaagcacgggctggaatttcgt |
126 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
40351 |
atatactagcttagaaacccgtgccaagcacgggctagaatttcgt |
40396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 4817 - 4868
Alignment:
| Q |
85 |
actagcatagacacccgtgccaagcacgggctggaatttcgtcaaccttaag |
136 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
4817 |
actagcatggacatccgtgccaagcacgggctagaattccgtcaaacttaag |
4868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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