View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_18 (Length: 370)
Name: NF1388_low_18
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 45 - 353
Target Start/End: Complemental strand, 6226427 - 6226120
Alignment:
| Q |
45 |
atagatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagatttgctctgatgagttaaattttgctcttctgtaaagttat |
144 |
Q |
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| T |
6226427 |
atagatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagatttgctctgatgagttaaattttgttcttctgtaaagttat |
6226328 |
T |
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| Q |
145 |
tggggattttacttttggacaagtactatctttgataatttgtaaaaacatatattctttccatttatatattactcattacaaatctaacatatctgat |
244 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6226327 |
tggggattttacttttggacaagtaatatctttgatattttgtaaaaacatatattctt--catttatatattactcattacaaatctaacatatctgat |
6226230 |
T |
|
| Q |
245 |
ttgatgttacttgaattttatcaaatttgtttgattaggaagttatttaacactg-tatgtttacaagttctatcttttgnnnnnnntattccttatctc |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
6226229 |
ttgatgttacttgaattttatcaaatttgtttgattaggaagttatttaacactgttatgtttacaagttctatcttttgaaaaaaatattccttatctc |
6226130 |
T |
|
| Q |
344 |
cttcctattt |
353 |
Q |
| |
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|||||||||| |
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| T |
6226129 |
cttcctattt |
6226120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 6233691 - 6233582
Alignment:
| Q |
39 |
atgctgatagatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagatttgctctgatgagttaaattttgctcttctgtaa |
138 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| |
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| T |
6233691 |
atgctcatagatattcagaaattctacaacatggttatagaggagctgccatgtaattttgaagatttactctgatgagttagtttttgttcttatgtaa |
6233592 |
T |
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| Q |
139 |
agttattggg |
148 |
Q |
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|||||||||| |
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| T |
6233591 |
agttattggg |
6233582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 6249169 - 6249090
Alignment:
| Q |
48 |
gatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagatttgctctgatgagttaaattttg |
127 |
Q |
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||||||||||||||||||||| || ||||||||||||||||| ||| ||| |||||||||||||||||||| ||||| |
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| T |
6249169 |
gatattcagaaattctacaatgtgactatagaggagctgccatcaaatgttgctgatttgctctgatgagttaatttttg |
6249090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 6240645 - 6240533
Alignment:
| Q |
217 |
tactcattacaaatctaacatatctgatttgatgttacttgaattt------tatcaaatttgtttgattaggaagttatttaacactgtatgtttacaa |
310 |
Q |
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||||||| | |||||||||| |||||||||||||||| ||| ||| | |||||||||||| |||| |||||||||||||||||| |||||| |
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| T |
6240645 |
tactcatgagaaatctaacagatctgatttgatgttatttggattgggattctctcaaatttgtttaattaagaagttatttaacactgttatattacaa |
6240546 |
T |
|
| Q |
311 |
gttctatcttttg |
323 |
Q |
| |
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|| |||||||||| |
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|
| T |
6240545 |
gtgctatcttttg |
6240533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 6240765 - 6240694
Alignment:
| Q |
48 |
gatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagatttgctctgatgagtt |
119 |
Q |
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||||| |||||| ||| |||| || |||||||||||||||||| ||||||| |||||||||| ||||||| |
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| T |
6240765 |
gatatccagaaactctccaatgtgattatagaggagctgccatcaaattttgctgatttgctctcatgagtt |
6240694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 17545704 - 17545799
Alignment:
| Q |
45 |
atagatattcagaaattctacaatatggttatagaggagctgccatgcaattttgaagatttgctctgatgagttaaattttgctcttctgtaaag |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| | ||||| |||| ||||||| |
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| T |
17545704 |
atagatattcagaaattctacaatatggttatagaggagctgccatataattttgatgagttgctctgatgagttcatttttgttcttatgtaaag |
17545799 |
T |
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