View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1388_low_20 (Length: 351)

Name: NF1388_low_20
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1388_low_20
NF1388_low_20
[»] chr6 (2 HSPs)
chr6 (286-343)||(931464-931521)
chr6 (292-343)||(10607770-10607821)
[»] chr4 (6 HSPs)
chr4 (286-343)||(12589654-12589711)
chr4 (286-343)||(46764792-46764849)
chr4 (286-343)||(25655091-25655147)
chr4 (287-343)||(11680885-11680941)
chr4 (287-343)||(11689164-11689220)
chr4 (139-205)||(54818791-54818857)
[»] chr3 (1 HSPs)
chr3 (109-183)||(667636-667705)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 931464 - 931521
Alignment:
Q  286 ggacctatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 343  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931464 ggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 931521  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 10607821 - 10607770
Alignment:
Q  292 atgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10607821 atgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 10607770  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 12589711 - 12589654
Alignment:
Q  286 ggacctatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 343  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589711 ggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 12589654  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 46764792 - 46764849
Alignment:
Q  286 ggacctatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 343  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46764792 ggacccatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 46764849  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 25655147 - 25655091
Alignment:
Q  286 ggacctatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 343  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25655147 ggacccatgaaggaac-tggaacatggaatacaaatgaacaaatccagtagtataatc 25655091  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 11680885 - 11680941
Alignment:
Q  287 gacctatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 343  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  11680885 gacccatgaaggaacatggaacatggaatacaaatgaacaaatcaaatagtataatc 11680941  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 11689164 - 11689220
Alignment:
Q  287 gacctatgaaggaacatggaacatggaatacaaatgaacaaatccagtagtataatc 343  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  11689164 gacccatgaaggaacatggaacatggaatacaaatgaacaaatcaaatagtataatc 11689220  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 54818791 - 54818857
Alignment:
Q  139 aaccgcaataatttttaaatcttgagtttggattcatttgatatatcatgtataaaataatactttc 205  Q
    |||||||||||||| ||| | ||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  54818791 aaccgcaataatttgtaattgttgagtttgcattcatttgatatatcacgtataaagtaatactttc 54818857  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 667705 - 667636
Alignment:
Q  109 cataagcaaaatctggcatggtaattccataaccgcaataatttttaaatcttgagtttggattcatttgatata 183  Q
    |||||| ||||||| ||||| |||||||||||      |||||||||| ||||||||||||||||| ||||||||    
T  667705 cataagtaaaatctagcatgataattccataag-----taatttttaattcttgagtttggattcagttgatata 667636  T

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