View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_23 (Length: 339)
Name: NF1388_low_23
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 12880866 - 12880617
Alignment:
| Q |
7 |
tccgatccattgctacccctttgttccgcttgagagtcgaaattaatattccaaaccttatcagaatatccaatatcttggtggaatcgagaataaccaa |
106 |
Q |
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| T |
12880866 |
tccgatccattgctatccctttgttccgcttgagagtcgaaattaatattccaaaccttatcagaatatccaatatcttggtggaatcgagaataaccaa |
12880767 |
T |
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| Q |
107 |
cgatcaaacctaagatatcagtagtgacacaatctgacacttgtttgatagatccattcagcagagtagccattcagctgagcgtaggatttaatctgaa |
206 |
Q |
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| T |
12880766 |
cgatcaaacctaagatatcagtagtgacgcaatctaacacttgtttgatagatccattcagcagagcagccattcagctgagcgtaggacttaatctgaa |
12880667 |
T |
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| Q |
207 |
aattataaaggtaaatttatatcaacaaactaacaagtcactcatgcatg |
256 |
Q |
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| T |
12880666 |
aattataaaggtaaatttatatcaacaaactaacaagtcactcatgcatg |
12880617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 11797877 - 11797979
Alignment:
| Q |
38 |
gagagtcgaaattaatattccaaaccttatcagaatatccaatatcttggtggaatcgagaataaccaacgatcaaacctaagatatcagtagtgacaca |
137 |
Q |
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| T |
11797877 |
gagagtcgaaattactattccaaaccttacaaaaacgcccaatatcttgatggaattgagaataaccaacgatcaaatctgagagatcagtagtgacaca |
11797976 |
T |
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| Q |
138 |
atc |
140 |
Q |
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| T |
11797977 |
atc |
11797979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 12099383 - 12099463
Alignment:
| Q |
39 |
agagtcgaaattaatattccaaaccttatcagaatatccaatatcttggtggaatcgagaataaccaacgatcaaacctaa |
119 |
Q |
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| T |
12099383 |
agagttgaaattactattcaaaaccaaataagaacgtccaatatctgggtggaatcaagaataaccaacgatcaaacctaa |
12099463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 11798046 - 11798089
Alignment:
| Q |
197 |
ttaatctgaaaattataaaggtaaatttatatcaacaaactaac |
240 |
Q |
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| T |
11798046 |
ttaatctgagaattataaaggcaaatttatatcaacaaactaac |
11798089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 12848936 - 12848854
Alignment:
| Q |
37 |
tgagagtcgaaattaatattccaaaccttatcagaatatccaatatcttggtggaatcgagaataaccaacgatcaaacctaa |
119 |
Q |
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| T |
12848936 |
tgagagttgaaattattattcaaaacccaataagaacgaccaatatatgggtggaatcgagaataatcaacgatcaaacctaa |
12848854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 15448899 - 15449031
Alignment:
| Q |
37 |
tgagagtcgaaattaatattccaaaccttatcagaatatccaatatcttggtggaatcgagaataaccaacgatcaaacctaagatatcagtagtgacac |
136 |
Q |
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| T |
15448899 |
tgagagttgaaattactattcaaaaccttttctgaacgtcgagtatcgtggttgaatcgaaaataacaattgatcaaacttaagatatcgatggtgacac |
15448998 |
T |
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| Q |
137 |
aatctgac------acttgtttgatagatccat |
163 |
Q |
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| T |
15448999 |
aatccgacaatggaacttgtttgatagatccat |
15449031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 49520068 - 49519985
Alignment:
| Q |
252 |
gcatgttggggtattggatgggttagttattgtttaatattttgggtaatttgatttttgttatttgtgttttctgttctacct |
335 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520068 |
gcatgttggggtattggatgggttagttattgttttatagtttgggtaatttgatttttgttatttgtgttttctgttctacct |
49519985 |
T |
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