View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_24 (Length: 323)
Name: NF1388_low_24
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 15076237 - 15075938
Alignment:
| Q |
7 |
aaacaaccatagaatatttaatctataaattgttggtggtggtgtcttttggagttgaacttaactttgagtagtcatgacttgatttatatgaccatta |
106 |
Q |
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| T |
15076237 |
aaacaaccatagaatatttaatctataaattgttggtggtggtgtcatttggagttgaacttaactttgagtagtcatgacttgatttatatgaccatta |
15076138 |
T |
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| Q |
107 |
ttatccactttttccaatcttctatcggtttccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcattgtgcacaa |
206 |
Q |
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| T |
15076137 |
ttatccactttttccaatcttctatcagtttccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcattgtgcacaa |
15076038 |
T |
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| Q |
207 |
tttcttcagcattaagacattgaaacatgatgattgtaatctcattctctctgttgcccttccttagttttttcactttctccttagccttcaaaaccct |
306 |
Q |
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| T |
15076037 |
tttcttcagcattaatacattgaaacatgatgattgtaatctcattttccctgttgcccttccttagttttttcactttctcctttaccttcaaaaccct |
15075938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 15073441 - 15073142
Alignment:
| Q |
10 |
caaccatagaatatttaatctataaattgttggtggtggtgtcttttggagttgaacttaactttgagtagtcatgacttgatttatatgaccattatta |
109 |
Q |
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| T |
15073441 |
caaccatagaatatttaatctataaattgttggtggtggcgtcatttgaagttgaacttaactttgagtagtcatgacttgacttggatgaccattatta |
15073342 |
T |
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| Q |
110 |
tccactttttccaatcttctatcggtttccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcattgtgcacaattt |
209 |
Q |
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| T |
15073341 |
tccacttcttccaatcttctatgaatatccttcaaattttgatcaatcaaccaagcaagaacattcaaatcaatcattgacgtatcatcgtgcataattt |
15073242 |
T |
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| Q |
210 |
cttcagca----ttaagacattgaaacatgatgattgtaatctcattctctctgttgcccttccttagttttttcactttctccttagccttcaaaaccc |
305 |
Q |
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| T |
15073241 |
tttcagcattaattaagacattgaaacatgatcattgtcatctcttgctccctgtttcccttccttagtttttccactttctccttagccttcaaaaccc |
15073142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 13308670 - 13308514
Alignment:
| Q |
75 |
gagtagtcatgacttgatttatatgaccattattatccactttttccaatcttctatcggtttccttcaaattttggtcaatcaaccaagcaagatcatt |
174 |
Q |
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| T |
13308670 |
gagtagtcatgatttgattt---tgaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagattatt |
13308574 |
T |
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| Q |
175 |
caaatcaatcattgacatatcattgtgcacaatttcttcagcattaagacattgaaacat |
234 |
Q |
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| T |
13308573 |
cacatcaaccattgacatattgttgtccacaattttccctgcattcaggcattgaaacat |
13308514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 11096217 - 11096173
Alignment:
| Q |
137 |
tccttcaaattttggtcaatcaaccaagcaagatcattcaaatca |
181 |
Q |
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| T |
11096217 |
tccttcaaattatggtcaatcaaccaagaaagatcactcaaatca |
11096173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 11106912 - 11106879
Alignment:
| Q |
137 |
tccttcaaattttggtcaatcaaccaagcaagat |
170 |
Q |
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| T |
11106912 |
tccttcaaattgtggtcaatcaaccaagcaagat |
11106879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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