View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_26 (Length: 321)
Name: NF1388_low_26
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 15076136 - 15075837
Alignment:
| Q |
1 |
tatccactttttccaatcttctatcggtttccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcattgtgcacaat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15076136 |
tatccactttttccaatcttctatcagtttccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcattgtgcacaat |
15076037 |
T |
|
| Q |
101 |
ttcttcagcattaagacattgaaacatgatgattgtaatctcattctctctgttgcccttccttagttttttcactttctccttagccttcaaaaccctt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15076036 |
ttcttcagcattaatacattgaaacatgatgattgtaatctcattttccctgttgcccttccttagttttttcactttctcctttaccttcaaaaccctt |
15075937 |
T |
|
| Q |
201 |
tgctacatgaatgtctcttggtttatcattttcttgttcttctctaattcaggcattgtcctgaattttgagagcaccctatgaactccccatgatgatg |
300 |
Q |
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||| |||||||||||| ||||| || ||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
15075936 |
tgcaccatgaatgtctcctggttcataattttcttggtcttcttcgattcatgcatagtcctgaattttgagagcaccctatgaactcctcatggtgatg |
15075837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 15073343 - 15073040
Alignment:
| Q |
1 |
tatccactttttccaatcttctatcggtttccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcattgtgcacaat |
100 |
Q |
| |
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||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||||| ||| |
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| T |
15073343 |
tatccacttcttccaatcttctatgaatatccttcaaattttgatcaatcaaccaagcaagaacattcaaatcaatcattgacgtatcatcgtgcataat |
15073244 |
T |
|
| Q |
101 |
ttcttcagcattaa----gacattgaaacatgatgattgtaatctcattctctctgttgcccttccttagttttttcactttctccttagccttcaaaac |
196 |
Q |
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|| ||||||||||| |||||||||||||||| ||||| ||||| | ||| ||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
15073243 |
tttttcagcattaattaagacattgaaacatgatcattgtcatctcttgctccctgtttcccttccttagtttttccactttctccttagccttcaaaac |
15073144 |
T |
|
| Q |
197 |
cctttgctacatgaatgtctcttggtttatcattttcttgttcttctctaattcaggcattgtcctgaattttgagagcaccctatgaactccccatgat |
296 |
Q |
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|| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15073143 |
ccgttgcctcatgaatgtctcttggttcatcattttcttgttcttctctaattcaggcatagtcctgaattttgagagcaccctatgaactccccatgat |
15073044 |
T |
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| Q |
297 |
gatg |
300 |
Q |
| |
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|||| |
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| T |
15073043 |
gatg |
15073040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 13308611 - 13308514
Alignment:
| Q |
30 |
tccttcaaattttggtcaatcaaccaagcaagatcattcaaatcaatcattgacatatcattgtgcacaatttcttcagcattaagacattgaaacat |
127 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||| |||||||| | ||||| || ||||||||||| |
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| T |
13308611 |
tccttcaaattttggtcaatcaaccaagcaagattattcacatcaaccattgacatattgttgtccacaattttccctgcattcaggcattgaaacat |
13308514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 13308473 - 13308405
Alignment:
| Q |
168 |
tttttcactttctccttagccttcaaaaccctttgctacatgaatgtctcttggtttatcattttcttg |
236 |
Q |
| |
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|||||||| | ||| |||||||||| |||||||| | |||||| |||||||| || |||||||||||| |
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| T |
13308473 |
tttttcacctgctctttagccttcatcaccctttggttcatgaaagtctcttgattcatcattttcttg |
13308405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 19004532 - 19004615
Alignment:
| Q |
188 |
cttcaaaaccctttgctacatgaatgtctcttggtttatcattttcttgttcttctctaattcaggcattgtcctgaattttga |
271 |
Q |
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||||||||||||||| | | |||| |||||||| || ||||||||||| |||||||| |||| || ||| |||||||||||||| |
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| T |
19004532 |
cttcaaaaccctttgtttcttgaaagtctcttgattcatcattttctttttcttctccaatttagtcatagtcctgaattttga |
19004615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 18950208 - 18950291
Alignment:
| Q |
188 |
cttcaaaaccctttgctacatgaatgtctcttggtttatcattttcttgttcttctctaattcaggcattgtcctgaattttga |
271 |
Q |
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||||||||||||||| | | |||| |||||||| || ||||||||||| |||||||| |||| | ||| ||||||||||||| |
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| T |
18950208 |
cttcaaaaccctttgtttcttgaaagtctcttgattcatcattttctttttcttctccaatttaatcataatcctgaattttga |
18950291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 11096217 - 11096173
Alignment:
| Q |
30 |
tccttcaaattttggtcaatcaaccaagcaagatcattcaaatca |
74 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||| |||||||| |
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| T |
11096217 |
tccttcaaattatggtcaatcaaccaagaaagatcactcaaatca |
11096173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 11106912 - 11106879
Alignment:
| Q |
30 |
tccttcaaattttggtcaatcaaccaagcaagat |
63 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
11106912 |
tccttcaaattgtggtcaatcaaccaagcaagat |
11106879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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