View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_3 (Length: 594)
Name: NF1388_low_3
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 39543817 - 39544258
Alignment:
| Q |
19 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
39543817 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggat |
39543916 |
T |
|
| Q |
119 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
218 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39543917 |
caaagacttgttattgttgggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
39544016 |
T |
|
| Q |
219 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacactttataatctatactatatacaaagtggtcccaaaccta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
39544017 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacac-ttataatctatactatatacaaagcggtcccaaaccta |
39544115 |
T |
|
| Q |
319 |
caccactagaccaactaagtcgttaaaaattaaaatttaataaaaactattgtgagtaatttattcacatcagtgcaataaaaagataagactgacgggt |
418 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
39544116 |
caccactagaccaaccaagtcgttaaaaattaaaatttaataaaatctattgtttgtaatttatccacatcggtgcaataaaaagataagactgacgggt |
39544215 |
T |
|
| Q |
419 |
gaagaatgttcgtctaaaggttagtactaattatgatattgat |
461 |
Q |
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| T |
39544216 |
aatgaatgtccgtctaaacgctggtactaattatgataatgat |
39544258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 39553836 - 39554097
Alignment:
| Q |
19 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggat |
118 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
39553836 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
39553935 |
T |
|
| Q |
119 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
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| T |
39553936 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatggtcaaaagtgcaagcc |
39554035 |
T |
|
| Q |
219 |
actactaatccaccacatttcatccatgttgtctgcatagtaacaatgacgattaaaacact |
280 |
Q |
| |
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|||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |
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|
| T |
39554036 |
actactaaaccaccacatttcatccaagttgcctgcatagtaacaatgataattaaaacact |
39554097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 39586948 - 39587191
Alignment:
| Q |
21 |
gagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcgttattgggatca |
120 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||||||||||| ||| |||||||| ||| |||| | |||||||||||| ||| ||||||||| |
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| T |
39586948 |
gagatggggatgtacatgtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatca |
39587047 |
T |
|
| Q |
121 |
aagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccac |
220 |
Q |
| |
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|||||||||||| | | || ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||| ||||| |
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| T |
39587048 |
aagacttgttattgctcgatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatggtcaaaattgcacgccac |
39587147 |
T |
|
| Q |
221 |
tactaatccaccacatttcatccatgttgtctgcatagtaacaa |
264 |
Q |
| |
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|||||| ||||||||||||||||| |||| ||||| ||| |||| |
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|
| T |
39587148 |
tactaacccaccacatttcatccaagttgcctgcacagttacaa |
39587191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 452 - 565
Target Start/End: Original strand, 39544742 - 39544855
Alignment:
| Q |
452 |
tgatattgattattataacagtacatgcttatagtaattctttgcctattggaatattcccttgagaacaaaatgttttgttaataaaataaatcttttt |
551 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544742 |
tgataatgattattataacaatacatgcttatagtaattctttgccaattggaatattcccttgagaacaaaatgttttgttaataaaataaatcttttt |
39544841 |
T |
|
| Q |
552 |
tcacctgaacagca |
565 |
Q |
| |
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|||||||| ||||| |
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| T |
39544842 |
tcacctgagcagca |
39544855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 17503782 - 17503870
Alignment:
| Q |
147 |
atctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactactaatccaccaca |
235 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||| || ||||| ||||| ||||| ||||| |||||||||| |||||||| |
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| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatgatcaaatgtgcatgccactactatcccaccaca |
17503870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 17475654 - 17475735
Alignment:
| Q |
142 |
gagctatctcggcccatgatacaaggaacatgtttgctgaatatgcgtccgctatacgatggtcaaaagtgcaagccactac |
223 |
Q |
| |
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|||| ||||||||||||||||| | ||||||||||| ||| || || || ||||| ||||| ||||| ||||| |||||||| |
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| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatgatcaaatgtgcatgccactac |
17475735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 32797430 - 32797490
Alignment:
| Q |
342 |
taaaaattaaaatttaataaaaactattgtgagtaatttattcacatcagtgcaataaaaa |
402 |
Q |
| |
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||||||||||||||| ||||||| |||||| ||||||||| ||||| || ||||||||| |
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| T |
32797430 |
taaaaattaaaatttcataaaaattattgttcgtaatttatacacattagcacaataaaaa |
32797490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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