View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1388_low_35 (Length: 291)
Name: NF1388_low_35
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 49520239 - 49519985
Alignment:
| Q |
19 |
aggatacacatgattgctactttgtgtgaccagatatattttactcgtttttagacagtagattacctttcatatattctgctctcctctactgtgataa |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520239 |
aggatacacatgattgctactttgcgtggccagatatattttactcgtttttagacagtagattacctttcatatattctgctctcctctactgtgataa |
49520140 |
T |
|
| Q |
119 |
caagttgagaaattacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgttggggtattggatgggttagtta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520139 |
caagttgagaaattacatgctcaacttgtttgctgaatgccaattttcagcattaaccagcttgccaactagcatgttggggtattggatgggttagtta |
49520040 |
T |
|
| Q |
219 |
ttgttttatagtttgggtaatttgatttttgttatttgtgttttctgttctacct |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520039 |
ttgttttatagtttgggtaatttgatttttgttatttgtgttttctgttctacct |
49519985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 244
Target Start/End: Complemental strand, 49530957 - 49530839
Alignment:
| Q |
126 |
agaaattacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgtt-ggggtattggatgggttagttattgttt |
224 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||| |||||||| || ||| |||||||||| ||| ||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
49530957 |
agaaattacatgctctacttgttcgccaaatgccaattttaag-atttaccagcttgctaacaagcatgtgaggggcattgtatgggttagttattgtta |
49530859 |
T |
|
| Q |
225 |
tatagtttgggtaatttgat |
244 |
Q |
| |
|
|| |||| ||||| |||||| |
|
|
| T |
49530858 |
tacagttggggtagtttgat |
49530839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 49531097 - 49531046
Alignment:
| Q |
61 |
actcgtttttagacagtagattacctttcatatattctgctctcctctactg |
112 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
49531097 |
actcgtttttagacaatacattacctttcatatgttctgctctcctctactg |
49531046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 49525141 - 49525070
Alignment:
| Q |
132 |
tacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgttggggtattg |
205 |
Q |
| |
|
||||||||||||||||||| | | ||||||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
49525141 |
tacatgctcaacttgtttgttg--tgccaattttcagcattgaccagcttgctgactagcatgttgcggtattg |
49525070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University