View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_36 (Length: 289)
Name: NF1388_low_36
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 11561454 - 11561249
Alignment:
| Q |
10 |
caccacagatgcataatagccaaatacataatttaagagaaaaggggatattagggtaagagggatgcatcctaaaacatggtaacgatattattgtctg |
109 |
Q |
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| T |
11561454 |
caccacagatgcataatagccaaatacataatttaagagaaaaggggatattagggtaagagggatgcatcctaaaacatggtaatgatattattgtctg |
11561355 |
T |
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| Q |
110 |
cctctagtctattgaaccactacattagaacagagactcacaagttcacatggctaaaagaaaaccttgactcaaaaataataatattcctgtacaagat |
209 |
Q |
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| T |
11561354 |
cctctagtctattgaaccactacattagaacagagactcacaagttcacatggctaaaagaaaaccttgactcaaaaataataatattcctgtacaagat |
11561255 |
T |
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| Q |
210 |
gacaat |
215 |
Q |
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|||||| |
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| T |
11561254 |
gacaat |
11561249 |
T |
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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 32340740 - 32340792
Alignment:
| Q |
209 |
tgacaatatccatactatgtgatccttttcaagaaaatacctgattggttctt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32340740 |
tgacaatatccatactatgtgatccttttcaagaaaatacctgattggttctt |
32340792 |
T |
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