View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1388_low_37 (Length: 276)

Name: NF1388_low_37
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1388_low_37
NF1388_low_37
[»] chr8 (6 HSPs)
chr8 (105-276)||(3777657-3777828)
chr8 (108-262)||(3701281-3701438)
chr8 (108-240)||(3708073-3708205)
chr8 (108-262)||(3769990-3770147)
chr8 (108-262)||(3719557-3719714)
chr8 (108-262)||(33004902-33005059)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 105 - 276
Target Start/End: Original strand, 3777657 - 3777828
Alignment:
Q  105 agatcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcat 204  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3777657 agatcttcaattctttgtcgaatctcacttcgttcttcacctatcattagatctctaatcaccttagcaatttcatctctttcagctatgccaatctcat 3777756  T
Q  205 taaatcttaccttcaaaccaactccgagtccctctagcaaaatagcattcattctttgttcggaaaacaatg 276  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||    
T  3777757 taaatcttaccttcaaaccaactccgagtccctctaacaacatagcattcattctttgctctgaaaacaatg 3777828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 108 - 262
Target Start/End: Complemental strand, 3701438 - 3701281
Alignment:
Q  108 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa 207  Q
    ||||| ||||||||||||||||||||||||||||| || | |||||||||| ||| |||||||||||||||  ||||||| || ||||||||||||||||    
T  3701438 tcttcaattctttgtcgaatctcacttcgttcttctccgagcattagatctttaaccaccttagcaatttccactctttctgcaatgccattctcattaa 3701339  T
Q  208 atcttaccttcaaaccaactccgagtccctct---agcaaaatagcattcattctttg 262  Q
    || | | ||||||||| |||  ||||||||||   | ||||| |||||||||||||||    
T  3701338 atttgatcttcaaacccactttgagtccctctgtcaacaaaacagcattcattctttg 3701281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 3708205 - 3708073
Alignment:
Q  108 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa 207  Q
    ||||| |||||||||||||||||||| |||||||| || | |||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||||||    
T  3708205 tcttcaattctttgtcgaatctcactccgttcttctccgagcattagatgtctaaccaccttagcaatttcctctctttctgcaatgccattctcattaa 3708106  T
Q  208 atcttaccttcaaaccaactccgagtccctcta 240  Q
    || ||| ||||||||| |||   ||||||||||    
T  3708105 attttatcttcaaacccactttaagtccctcta 3708073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 262
Target Start/End: Original strand, 3769990 - 3770147
Alignment:
Q  108 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa 207  Q
    ||||| |||||||||||||||||||| |||||||| || | |||||||||| ||| ||||||||||||||| |||||||| || ||| ||||||||||||    
T  3769990 tcttcaattctttgtcgaatctcactccgttcttctccgagcattagatctttaaccaccttagcaatttcctctctttctgcaatgtcattctcattaa 3770089  T
Q  208 atcttaccttcaaaccaactccgagtccct---ctagcaaaatagcattcattctttg 262  Q
    || ||| ||||||||| |||   |||||||   |||  ||||||||||||||||||||    
T  3770090 attttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttg 3770147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 108 - 262
Target Start/End: Complemental strand, 3719714 - 3719557
Alignment:
Q  108 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcatctctttcagctatgccattctcattaa 207  Q
    |||||||||||||||||||||||||| |||| ||| || | |||||||||  ||| ||||||||||||||| |||||||| || || |||||||||||||    
T  3719714 tcttccattctttgtcgaatctcactccgtttttctccgagcattagatccttaaccaccttagcaatttcctctctttctgcaattccattctcattaa 3719615  T
Q  208 atcttaccttcaaaccaactccgagtccct---ctagcaaaatagcattcattctttg 262  Q
    || ||| ||||||||| |||   |||||||   |||  ||||||||||||||||||||    
T  3719614 attttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttg 3719557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 262
Target Start/End: Original strand, 33004902 - 33005059
Alignment:
Q  108 tcttccattctttgtcgaatctcacttcgttcttcacccatcattagatctctaatcaccttagcaatttcat-ctctttcagctatgccattctcatta 206  Q
    ||||| |||||||||  ||| ||||| | ||||||||| | ||||| |||||||||||||||||||||||| | ||||||| || |||||| |||||||     
T  33004902 tcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatcaccttagcaatttcctcctctttctgcaatgccactctcatt- 33005000  T
Q  207 aatcttaccttcaaaccaactccgagtccctc---tagcaaaatagcattcattctttg 262  Q
    ||| ||||||||||||| ||   |||||||||   || |||||||||||||| ||||||    
T  33005001 aattttaccttcaaacccaccttgagtccctctattaacaaaatagcattcaatctttg 33005059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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