View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1388_low_39 (Length: 265)
Name: NF1388_low_39
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 1725505 - 1725283
Alignment:
| Q |
15 |
gacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggaggattcttcttcggctttgaacttcg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1725505 |
gacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggaggattcttcttcagctttgaacttcg |
1725406 |
T |
|
| Q |
115 |
acatatcaatatcatccttggtggtagtagcatccacaatatttttattgtttatgattgcgtttgaacttgtagcaacatgtttagaagaatctcccca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1725405 |
acatatcaatatcatccttggtggtagtagcatccacaatatttttattttttatgattgcgtttgaacttgtagcaacatgtttagaagaatctcccca |
1725306 |
T |
|
| Q |
215 |
tttaaaaatagcaccaattttat |
237 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1725305 |
tttaaaaatagcaccaattttat |
1725283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 1745198 - 1744980
Alignment:
| Q |
17 |
catgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggaggattcttcttcggctttgaacttcgac |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| | |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
1745198 |
catgaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttctgcgttgaacttcgac |
1745099 |
T |
|
| Q |
117 |
atatcaatatcatcct---tggtggtagtagcatccacaatatttttattgtttatgattgcgtttgaacttgtagcaacatgtttagaagaatctcccc |
213 |
Q |
| |
|
| |||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||||| | |||||||||| ||||||| | ||||||||||||| |
|
|
| T |
1745098 |
aaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaatctccaa |
1744999 |
T |
|
| Q |
214 |
atttaaaaatagcaccaat |
232 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
1744998 |
atttagtaatagcaccaat |
1744980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 1739860 - 1739643
Alignment:
| Q |
15 |
gacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggaggattcttcttcggctttgaacttcg |
114 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| || ||||| |||||||||||| | |||||||||||||||||||||||||| | || ||||| | |
|
|
| T |
1739860 |
gacatgaaaacaaaatataaaaattgaatttaaagcctaagtgataaatcaagcccagacgaatcataattggaggattcttcttccgagttaaacttag |
1739761 |
T |
|
| Q |
115 |
acatatcaatatcatccttggtggtagtagcatccacaatatttttattgtttatgattgcgtttgaacttgtagcaacatgtttagaagaatctcccca |
214 |
Q |
| |
|
||| |||||||| ||||||||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| | |
|
|
| T |
1739760 |
acagatcaatattatccttggtagtagtatgatcctcactatttttattgtttatgattgtacttgaacttgtagcaacatttgtagaagaatctccaga |
1739661 |
T |
|
| Q |
215 |
tttaaaaatagcaccaat |
232 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
1739660 |
ttttataatagcaccaat |
1739643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 1760914 - 1760728
Alignment:
| Q |
20 |
gaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggaggattcttcttcggctttgaacttcgacata |
119 |
Q |
| |
|
||||||||||||||||| || ||||||||| | ||||| ||||||||| || | || || ||||||||||||||||||| |||||||| || | |
|
|
| T |
1760914 |
gaaaacaaaatataaaa-ctgaatttaaagcttaagtgataaatcaagcgcataagattccgaattggaggattcttcttcaaagttgaactttgattga |
1760816 |
T |
|
| Q |
120 |
tcaatatcatccttggtggtagtagcatccacaatatttttattgtttatgattgcgtttgaacttgtagcaacatgtttagaagaat |
207 |
Q |
| |
|
| ||||||||| | ||| |||| | |||| |||||||||||| |||||||| ||||||||||||| ||| || | ||||||||| |
|
|
| T |
1760815 |
tgaatatcatcttcggtataagtaagagacacattatttttattgtgtatgattgagtttgaacttgtatcaatatttgtagaagaat |
1760728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 23852609 - 23852548
Alignment:
| Q |
176 |
gtttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttat |
237 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
23852609 |
gtttgaacttgtagcaatatttgtagaagaatctcccaattttaaaatagcaccaattttat |
23852548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 3167741 - 3167680
Alignment:
| Q |
176 |
gtttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttat |
237 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
3167741 |
gtttgaacttgtagcaacatttgtagaagaatctcctaattttagaatagcaccaattttat |
3167680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 3156496 - 3156611
Alignment:
| Q |
122 |
aatatcatccttggtggtagtagcatccacaatatttttattgtttatgattgcgtttgaacttgtagcaacatgtttagaagaatctccccatttaaaa |
221 |
Q |
| |
|
||||||||| ||||| | ||||| | |||||||| ||| || | |||| ||| ||||||||||| |||||||| | ||||||||||||| |||| | | |
|
|
| T |
3156496 |
aatatcatctttggtagaagtaggagccacaataatttgcttttctatgtttgagtttgaacttgcagcaacatttgtagaagaatctcctaattttaga |
3156595 |
T |
|
| Q |
222 |
atagcaccaattttat |
237 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
3156596 |
atagcacctattttat |
3156611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 3138818 - 3138879
Alignment:
| Q |
176 |
gtttgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttat |
237 |
Q |
| |
|
||||||| |||||||||| | | |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
3138818 |
gtttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttat |
3138879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University