View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_4 (Length: 594)
Name: NF1388_low_4
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 8087871 - 8088437
Alignment:
| Q |
1 |
aattctgaggtaatcagaaacaatcttgtaatggataaatggttgctttaaaatttaacgatcttgtctctataactctattctgatacaccaaaaagtc |
100 |
Q |
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| T |
8087871 |
aattctgaggtaatcagaaacaatcttgtaatggataaatggttgctttaaaatttaatgattttgtctctataactctattctgatacaccaaaaagtc |
8087970 |
T |
|
| Q |
101 |
tta--atatttgaaaatcgaaactaaggacgattaacaaacacgtactctcctcaacccactgaagtgtctttcaattaagtacaaatctacgagggctc |
198 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8087971 |
ttacaatatttgagaatcgaaactaaggacgattaacaaacacgtactctcctcaactcactgaagtgtctttcaattaagtacaaatctacgagggctc |
8088070 |
T |
|
| Q |
199 |
acacaagattcaaaatgaataatacttcagaaatgcggtgcagctgacttgaggtccgaatgtcggctctgtctgagaaggagggtccaagtcacatacg |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8088071 |
acacaagattcaaaatgaataatacttcagaaatgcggtgcagctgacttgaggtccgaatgtcggctctgtctgagaaggagggtccaagccacatacg |
8088170 |
T |
|
| Q |
299 |
agagctaacaaaccctttagttccttagccttgactagtgacaactcttccattacaccaaaaagtgacacatagcttcataatttaggctaaggatggt |
398 |
Q |
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| T |
8088171 |
agagctaacaaaccctttagttccttagccttgactagtgacaactcttccattacaccaaaaagtgacacatagcttcataatttaggctaaggatggt |
8088270 |
T |
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| Q |
399 |
ttataaccacctatgagacgccttttaacaaaggacaaagccatgagagtttacgctagatgctttacccaaagcggacaatacctcgtgnnnnnnngaa |
498 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8088271 |
ttataaccacctacgagacgccttttaacaaaggacaaagccatgagagtttacgctagatgctttacccaaagcggacaatacctcgtgaaaaaaagaa |
8088370 |
T |
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| Q |
499 |
gttgcagcggactaatgattaccctgcatctgcagtttatatctactgcaaactgtatagttaaagt |
565 |
Q |
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| T |
8088371 |
gttgcagcggactaatgattaccctgcatctgcagtttatatctactgcaaactgtatagttaaagt |
8088437 |
T |
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