View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_44 (Length: 228)
Name: NF1388_low_44
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_44 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 6071040 - 6071261
Alignment:
| Q |
7 |
attgcatatgtccgaacccattttttgtagcaaatcgtgcatttgaattgtatggtcatttgagatagttatcaaagccatgtctttgaggactactatt |
106 |
Q |
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| T |
6071040 |
attgcatatgtccgaacccattttttgtagcaaatcgtgcatttgaattgtatggtcatttgagatagttatcaaagccatgtctttgaggactactatt |
6071139 |
T |
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| Q |
107 |
tcactacttgcttcgaaatcacaagcatctagtatcctggcaacacaatctttcttttctcctatgaaaaagaatgctatgcctagaaatatcttcttct |
206 |
Q |
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| T |
6071140 |
tcactacttgcttcgaaatcacaagcatctagtatcctcgcaacacaatctttcttttctcctatgaaaaagaatgctatgtctagaaatatcttcttct |
6071239 |
T |
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| Q |
207 |
gcagtgcatctaagtcatcata |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
6071240 |
gcagtgcatctaagtcatcata |
6071261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 6195329 - 6195534
Alignment:
| Q |
13 |
tatgtccgaacccattttttgtagcaaatcgtgcatttgaattgtatggtcatttgagatagttatcaaagccatgtctttgaggactactatttcacta |
112 |
Q |
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| T |
6195329 |
tatgtccgaacccattttttgcagtaagtcatgcatttgtattgtttggttatttgagatagttatcaaagccttgtctttgaggactactattccgcta |
6195428 |
T |
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| Q |
113 |
cttgcttcgaaatcacaagcatctagtatcctggcaacacaatctttcttttctcctatgaaaaagaatgctatgcctagaaatatcttcttctgcagtg |
212 |
Q |
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| T |
6195429 |
tttggttcgaaaccacaagcatctagtatctttgtgacagactctttcttttctcctatgaagaagaatgcaatgtctagaaatatcttcttctctagtg |
6195528 |
T |
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| Q |
213 |
catcta |
218 |
Q |
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|||||| |
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| T |
6195529 |
catcta |
6195534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 6124483 - 6124414
Alignment:
| Q |
126 |
cacaagcatctagtatcctggcaacacaatctttcttttctcctatgaaaaagaatgctatgcctagaaa |
195 |
Q |
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| T |
6124483 |
cacaagcatctagtatacttgtaacaaaatctttattttcatctttgaaaaagaatgcaatgtctagaaa |
6124414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 37451647 - 37451432
Alignment:
| Q |
13 |
tatgtccgaacccattttttgtagcaaatcgtgcatttgaattgtatggtcatttgagatagttatcaaagccatgtctttgaggactactatttcacta |
112 |
Q |
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|||||||||||||||||| || ||||| || |||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||| |||||| |||| |
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| T |
37451647 |
tatgtccgaacccattttctgcagcaagtcatgcatttgtattgtatggttatttgagacagttatcaaagccttgtctttgaggacaactattccactg |
37451548 |
T |
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| Q |
113 |
cttgcttcgaaatcacaagcatctagtatcctggcaacacaatctttcttttctcctatgaaaaagaatgctatgcctagaaatatcttcttctgcagtg |
212 |
Q |
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||| ||| ||| ||||||||||||||||| | | |||| |||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||| |
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| T |
37451547 |
tttggttcaaaaccacaagcatctagtatctttgtcacacgctctttcttttctcctatgaagaagaatgcaatgtcaagaaatatcttcttctgcagtg |
37451448 |
T |
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| Q |
213 |
catctaagtcatcata |
228 |
Q |
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||||||| |||||||| |
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| T |
37451447 |
catctaattcatcata |
37451432 |
T |
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