View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_45 (Length: 228)
Name: NF1388_low_45
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53539881 - 53539660
Alignment:
| Q |
1 |
cactgaatttttgcttcagaatgtatttcccaggtttaataggcgtaagcttcttcagtccaacagtttgggctcccgcttttgatttagaagatacatc |
100 |
Q |
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| T |
53539881 |
cactgaatttttgcttcagaatgtatttcccaggtttaataggcgtaagcttcttcagtccaacagtttgggctcccgcttttgatttagaagatacatc |
53539782 |
T |
|
| Q |
101 |
cactacaattatactcattnnnnnnnntcaactgaaccatactaaacaaatgatagatggaatacaatatatatagatcagtttaattttgcatataccg |
200 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53539781 |
cactacaattatactcattaaaaaaaatcaattgaaccatactaaacaaatgatagatggaatacaatatatatagatcagtttaattttgcatataccg |
53539682 |
T |
|
| Q |
201 |
ttagcaatgtcggacaaagggt |
222 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
53539681 |
ttagtaatgtcggacaaagggt |
53539660 |
T |
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