View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_5 (Length: 552)
Name: NF1388_low_5
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 9 - 523
Target Start/End: Complemental strand, 3292532 - 3292018
Alignment:
| Q |
9 |
atcataggaggattcgctgaaagagaaaactctgatatgacaatgcctagtatagttgaacggagctcagctgaagttcttgactcgcaagcaagaaaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3292532 |
atcataggaggattcgctgaaagagaaaactctgatatgacaatgcctagtatagttgaacggagctcagctgaggttcttgactcgcaagcaagaaaat |
3292433 |
T |
|
| Q |
109 |
gggacctcattgtaggtatgtggcagctcgacgtgccacctaatcaaattgtggcggtgaatgacactctttttagctcaggggattgtttgaatgcttg |
208 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3292432 |
gggacctcattgcaggaatgtggcagctcgacgtgccacctaatcaaattgtggcggtgaatgacactctttttagctcaggggattgtttgaatgcttg |
3292333 |
T |
|
| Q |
209 |
gaaaggacatgttgaggcgtatgatggtaaattttggaatgaagttgatggatcgcgcaagagaagtctttcaacgttggaatataactacgagaattgg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3292332 |
gaaaggacatgttgaggcgtatgatggtaaattttggaatgaagttgatggatcgcgcaagagaagtctttcaacgttggaatataactacgagaattgg |
3292233 |
T |
|
| Q |
309 |
cctcttaatcaaagactctacttaactatggcaccaattgggaataaattgtttttcttggcaggttatagggtaggtggcggcgaattagcaagaacaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3292232 |
cctcttaatcaaagactctacttaactatggcaccaattgggaataaattgtttttcttggcaggttatagggtaggtggcggcgaattagcaagaacaa |
3292133 |
T |
|
| Q |
409 |
tgtctgttgttcacgtatttgatacatcggccaccgtggatccttggaagagttttgaaccaatggagttggagggtgaaaaagagctatgcagtcattg |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3292132 |
tgtctgttgttcacgtatttgatacatcggccaccgtggatccttggaagagttttgaaccaatggagttggagggtgaaaaagagctatgtagtcattg |
3292033 |
T |
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| Q |
509 |
ttgtgttgtgcaact |
523 |
Q |
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||||||||||||||| |
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| T |
3292032 |
ttgtgttgtgcaact |
3292018 |
T |
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