View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388_low_7 (Length: 464)
Name: NF1388_low_7
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 34994537 - 34994115
Alignment:
| Q |
14 |
atataacctaatgtaattataaaacatcaaaccaaatataatatgtgaaattatcaatatggtttgcttataaagaaaattaaaaggagtatatgtatgt |
113 |
Q |
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| T |
34994537 |
atataacctaatgtaattataaaacatcaaaccaaatataatatgtgaaattatcaatatggtttgcttataaagaaaattaaagggagtatatgtatgt |
34994438 |
T |
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| Q |
114 |
aaagaaccttggagtttccattgggcattcctcctataatcaaacagcctgaaggtcttttatgaaaattgtttgagaaagaaggtaaaatgtcctccaa |
213 |
Q |
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| T |
34994437 |
aaagaaccttggagtttccattgggcattcct---ataatcaaacagcctgaaggtcttttatgaaaattgtttgagaaagaaggtaaaatgtcctccaa |
34994341 |
T |
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| Q |
214 |
agatacatcaacaacagcccatatgttatgagtaaattgtttgctatatcttgcaaacacacactcccgagttggtataaaaggactaggcaaataaatt |
313 |
Q |
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| T |
34994340 |
agatacatcaacaacagcccatatgttatgagtaaattgtttgctatatcttgcaaacacacactcccgagttggtataaaaggactaggcaaataaaat |
34994241 |
T |
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| Q |
314 |
tctgcactcatctgcaaataaaattatatatata----aagtgaaatgagaatagatacaaagaccaatttgagaaaacatacaaaggacacgacaaata |
409 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34994240 |
tctgcactcatctgcaaataaaattatatatatatatcaagtgaaatgagaatagatacaaagaccaatttgagaaaacatagaaaggacacgacaaata |
34994141 |
T |
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| Q |
410 |
aacctagcaagaattttcacactaaa |
435 |
Q |
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| T |
34994140 |
aacctagcaagaattttcacactaaa |
34994115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 76 - 333
Target Start/End: Complemental strand, 34986111 - 34985857
Alignment:
| Q |
76 |
tttgcttataaagaaaattaaaaggagtatatgtatgtaaagaaccttggagtttccattgggcattcctcctataatcaaacagcctgaaggtctttta |
175 |
Q |
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|||| |||||| |||| |||||| |||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||| |||||||||||| |
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| T |
34986111 |
tttgtttataatcaaaactaaaagcagtatatgtatgtatcaaaccttggagtttccatcgggcattccttc---aatcaaacagccagaaggtctttta |
34986015 |
T |
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| Q |
176 |
tgaaaattgtttgagaaagaaggtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtaaattgtttgctatatcttgcaaacacac |
275 |
Q |
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||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
34986014 |
tgaaaattgttagaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatgttatgagtgaattgtttgctatatcttgcaaaaacac |
34985915 |
T |
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| Q |
276 |
actcccgagttggtataaaaggactaggcaaataaatttctgcactcatctgcaaata |
333 |
Q |
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||| |||||||||||||| |||||| || |||| || ||||||||||||||||||||| |
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| T |
34985914 |
acttccgagttggtataacaggacttggtaaatgaaattctgcactcatctgcaaata |
34985857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 34985760 - 34985703
Alignment:
| Q |
369 |
aaagaccaatttgagaaaacatacaaaggacacgacaaataaacctagcaagaatttt |
426 |
Q |
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|||||||||||||| || |||||||||||||| ||||| | || |||||||||||||| |
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| T |
34985760 |
aaagaccaatttgacaatacatacaaaggacaagacaagttaaactagcaagaatttt |
34985703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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