View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1388_low_9 (Length: 445)

Name: NF1388_low_9
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1388_low_9
NF1388_low_9
[»] chr4 (7 HSPs)
chr4 (24-444)||(39576197-39576617)
chr4 (24-444)||(39521552-39521972)
chr4 (24-444)||(39544345-39544762)
chr4 (125-445)||(39511305-39511625)
chr4 (125-440)||(39525053-39525368)
chr4 (154-330)||(39580840-39581016)
chr4 (392-444)||(39580737-39580789)
[»] chr7 (2 HSPs)
chr7 (129-406)||(3331422-3331696)
chr7 (410-444)||(3331275-3331309)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 24 - 444
Target Start/End: Complemental strand, 39576617 - 39576197
Alignment:
Q  24 tcatcaattgtggatcagatatcgacgtgaatgaaaataagaatctttatattggtgaatcaaaccatgcttaccctaaaaaattattcagccaaagaag 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39576617 tcatcaattgtggatcagatatcgacgtgaatgaaaataagaatctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaagaag 39576518  T
Q  124 ttccatagaaaccaatccatcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccgtaccaaac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39576517 ttccatagaaaccaatccatcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccataccaaac 39576418  T
Q  224 aacacttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttac 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576417 aacacttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttac 39576318  T
Q  324 ataatttcaacgctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaac 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576317 ataatttcaacgctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaac 39576218  T
Q  424 atcatcatttgcgtttgttaa 444  Q
    |||||||||||||||||||||    
T  39576217 atcatcatttgcgtttgttaa 39576197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 24 - 444
Target Start/End: Complemental strand, 39521972 - 39521552
Alignment:
Q  24 tcatcaattgtggatcagatatcgacgtgaatgaaaataagaatctttatattggtgaatcaaaccatgcttaccctaaaaaattattcagccaaagaag 123  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||| |     
T  39521972 tcatcaattgtggatcagatatcgacgtgaatgaaaataacaacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaa 39521873  T
Q  124 ttccatagaaaccaatccatcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccgtaccaaac 223  Q
     |||| || ||| | || |||| ||||||||||||||||  ||||||||||||||||||||| |||  | || ||||| |||||    ||||| |||| |    
T  39521872 ctccaaagtaacaagtcaatcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaagc 39521773  T
Q  224 aacacttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttac 323  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| | |||| ||||||||||||||||||||||    
T  39521772 aacacttacatggtacgtttccatttcttttcattctcttcaccaactaacctttcctctgcaaaattcaccgtttcagttcctggtttccttctgttac 39521673  T
Q  324 ataatttcaacgctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaac 423  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||    
T  39521672 ataatttcaacgctgaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaac 39521573  T
Q  424 atcatcatttgcgtttgttaa 444  Q
    |||||||||||||||||||||    
T  39521572 atcatcatttgcgtttgttaa 39521552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 24 - 444
Target Start/End: Complemental strand, 39544762 - 39544345
Alignment:
Q  24 tcatcaattgtggatcagatatcgacgtgaatgaaaataagaatctttatattggtgaatcaaaccatgcttaccctaaaaaattattcagccaaagaag 123  Q
    |||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||| | ||||||| |||| |   |||||   || |||    
T  39544762 tcatcaattgcggatcagatattgacgtgaatgaaaataacaacctttatattggtgaatcaaaccctacttacccaaaaacaagtttcag---aaaaag 39544666  T
Q  124 ttccatagaaaccaatccatcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccgtaccaaac 223  Q
     |||| || ||| | || |||| |||||| ||||||||| |||||||||||||| || |||||||| || || ||||| |||||||||||| ||||||||    
T  39544665 ctccaaagtaacaagtcaatcaccagtgttttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaac 39544566  T
Q  224 aacacttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttac 323  Q
    ||||| || |||||| |||||| ||||||||||||||||||||||||||| |||||| |||||||||||||  |||| || ||||||||| |||||||||    
T  39544565 aacacctacatggtatgtttccatttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgttac 39544466  T
Q  324 ataatttcaacgctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaac 423  Q
    | ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||    
T  39544465 aaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaac 39544366  T
Q  424 atcatcatttgcgtttgttaa 444  Q
    ||| |||||||||||| ||||    
T  39544365 atcttcatttgcgttttttaa 39544345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 125 - 445
Target Start/End: Complemental strand, 39511625 - 39511305
Alignment:
Q  125 tccatagaaaccaatccatcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccgtaccaaaca 224  Q
    ||||||||||| |||| |||||||||  ||||| |||| |||||||| ||||| ||||||| ||| ||||| |  ||||||||    ||| | |||||||    
T  39511625 tccatagaaacaaatcaatcatcagttccttcatctctctaccaaactgcaaggattttccgttccgaatcttggtacgaattcaaaaccatcccaaaca 39511526  T
Q  225 acacttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttaca 324  Q
    |||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||   |||| |||||||||||| ||||||||||    
T  39511525 acacctatatggtacgtttccatttcctttcattctctacaccaactaaactttccactgcaaaattcactgtttcagttcctggtttcattctgttaca 39511426  T
Q  325 taatttcaacgctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaaca 424  Q
     |||||||||||||||||||||||||| ||| ||||||||||||| || |||||| ||||||| |||||||||||||||||||  ||||||||||||| |    
T  39511425 aaatttcaacgctgaaaacaccaccaactctcctttagtaaaagaatactacgttcaaatcatcagaaaaagattcaaaatcactttcacacctcaaaaa 39511326  T
Q  425 tcatcatttgcgtttgttaac 445  Q
    |||||| | || |||||||||    
T  39511325 tcatcactcgcatttgttaac 39511305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 125 - 440
Target Start/End: Complemental strand, 39525368 - 39525053
Alignment:
Q  125 tccatagaaaccaatccatcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccgtaccaaaca 224  Q
    ||||||||||||| || |||||||||| |||||||||| |||||||||||||| || || ||||| ||||| |  ||||| ||    |||||||||||||    
T  39525368 tccatagaaaccagtcaatcatcagtgccttcacctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaaca 39525269  T
Q  225 acacttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttaca 324  Q
    |||| || ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||||||| | |||| || ||||||||| ||||||||||    
T  39525268 acacctacatggtacgtttccatttcttttcattctcttcaccacttaacctttccactgcaaaattcaccgtttcagtccctggtttcattctgttaca 39525169  T
Q  325 taatttcaacgctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaaca 424  Q
     |||||| | ||  ||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||| |    
T  39525168 aaatttcgatgcaaaaaacaccaccaactctcctttagtaaaagagtattaccttaaaatcatcagaaaaaaattcaaaatcacgttcacacctcaaaaa 39525069  T
Q  425 tcatcatttgcgtttg 440  Q
     |||||||||| ||||    
T  39525068 gcatcatttgcctttg 39525053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 330
Target Start/End: Complemental strand, 39581016 - 39580840
Alignment:
Q  154 ttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccgtaccaaacaacacttatatggtacgtttccgtttcttt 253  Q
    ||||||||| |||||||||||||  || |||| |||  |||| | |||||||||    |||||||||||||||||||| ||||||||||||| |||||||    
T  39581016 ttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttcttt 39580917  T
Q  254 tcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttacataattt 330  Q
      |||||||| ||||||||| ||||||||||||||||||||| ||||| |||| ||||||  ||||||||| |||||    
T  39580916 ctattctctttaccaactaatctttccactgcaaaattcaacgtttcctttccaggtttctctctgttacaaaattt 39580840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 39580789 - 39580737
Alignment:
Q  392 aaaagattcaaaatcatattcacacctcaaacatcatcatttgcgtttgttaa 444  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  39580789 aaaagattcaaaatcactttcacacctcaaacctcatcatttgcgtttgttaa 39580737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 129 - 406
Target Start/End: Original strand, 3331422 - 3331696
Alignment:
Q  129 tagaaaccaatccatcatcagtgtcttcacctctttaccaaacagcaagaattttccattctgaatcctcctacgaattttctaccgtaccaaacaacac 228  Q
    ||||||| |||| || ||||||  |||||||||||||||||| |||||||||||||||||||||||| |  ||   |||  |||   | |||||||||||    
T  3331422 tagaaacaaatcaataatcagttccttcacctctttaccaaagagcaagaattttccattctgaatcttggtag--attcactattatcccaaacaacac 3331519  T
Q  229 ttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctgttacataat 328  Q
     || ||||||||||||| |||| |||||||||||||||||| ||| |||||||||||||| ||||||||||| ||| | |||||||||||||||  ||||    
T  3331520 ctacatggtacgtttccatttcctttcattctcttcaccaattaacctttccactgcaaa-ttcaacatttctgtttccggtttccttctgttaactaat 3331618  T
Q  329 ttcaacgctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatc 406  Q
    ||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  3331619 ttcgacgctaaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcataaaaagattcacaatc 3331696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 444
Target Start/End: Original strand, 3331275 - 3331309
Alignment:
Q  410 ttcacacctcaaacatcatcatttgcgtttgttaa 444  Q
    |||||||||||||||||||||||||| ||||||||    
T  3331275 ttcacacctcaaacatcatcatttgcatttgttaa 3331309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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