View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13890_low_1 (Length: 586)
Name: NF13890_low_1
Description: NF13890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13890_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 84 - 574
Target Start/End: Complemental strand, 11019773 - 11019283
Alignment:
| Q |
84 |
aaatctattgattataaggtggttaaaaattaaaattgacatattagcttatgaaagacatactattatgtcatgaagcaaagagcagccacacatannn |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11019773 |
aaatctattgattataaggtggttaaaaattaaaattgacatattagcttatcacagacatactattatgtcataaagcaaagagcagccacacatattt |
11019674 |
T |
|
| Q |
184 |
nnnnnatcagaaaataattccnnnnnnngatacggcatatgatacatgaacatcattcttcatgacataaaaaagatactactaattttaattcacatct |
283 |
Q |
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|||||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11019673 |
tttt-atcagataataattctgaaaaaagatacgacatatgatgcatgaacatcattcttcatgacataaaaaagatactactaattttgattcacatct |
11019575 |
T |
|
| Q |
284 |
caatgtaatacacatatttataannnnnnn-attggcatggacacacatttcgaattttattccatctaaagaattatttctaattttcaacgaagaagg |
382 |
Q |
| |
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|||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
11019574 |
caatataatacacatatttataattttttttattagcatggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaagg |
11019475 |
T |
|
| Q |
383 |
aaaggggaatttggtgatacactattccaagaagcatgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttg |
482 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11019474 |
aaaggggaatttggtgataaactattccaagaagcatgctccctccatgaatctcccaactttttcaaatcaacaagagaagatccacctcctcctcttg |
11019375 |
T |
|
| Q |
483 |
cttccttagcacatattttcattttcaaaatcctctctttaatctcctttccatggtccgattcgctcaattccttagctctctctcccaac |
574 |
Q |
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| T |
11019374 |
cctccttagcacttattttcattttcaaaatcctctctttaatatcctttccacggtccgattccatcaactccttaactctctcacccaac |
11019283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 11050872 - 11050445
Alignment:
| Q |
1 |
ataagtatcgttatgtcttatactaatttgttttattatagttgtgctttattgatnnnnnnnntatagcatctcttgcatcaaaatctattgattataa |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11050872 |
ataagtctcgttatgtcttatactaatttgttttattatagttgtgctttattgataaaaaaaatatagcatctcttgcatcaaaatctattgattataa |
11050773 |
T |
|
| Q |
101 |
ggtggttaaaaattaaaattgacatattagcttatgaaagacatactattatgtcatgaagcaaagagcagccacacatannnnnnnnatcagaaaataa |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| ||| |||||||| |
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| T |
11050772 |
ggtggttaaaaattaaaattgacatattagcttatgacagacatactattatgtgatgacgcaaagagcagccacacata-tttttttatcggaaaataa |
11050674 |
T |
|
| Q |
201 |
ttccnnnnnnngatacggc--atatgatacatgaacatcattcttcatgacataaaaaagatactactaattttaattcacatctcaatgtaatacacat |
298 |
Q |
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|||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11050673 |
ttccaaaaaaagatacgacatatatgatacatgaacatcattcttcatgacataaaaaagatactactaattttaattcacatctcaatgtaatacacat |
11050574 |
T |
|
| Q |
299 |
atttataa-nnnnnnnattggcatggacacacatttcgaattttattccatctaaagaattatttctaattttcaacgaagaaggaaaggggaatttggt |
397 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| | |||||| | |
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| T |
11050573 |
atttataattttttttattggcatggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaagtgaaatttgat |
11050474 |
T |
|
| Q |
398 |
gatacactattccaagaagcatgctctct |
426 |
Q |
| |
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|||| ||||||||||||||||| |||||| |
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|
| T |
11050473 |
gataaactattccaagaagcatcctctct |
11050445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 386 - 574
Target Start/End: Complemental strand, 11080231 - 11080043
Alignment:
| Q |
386 |
ggggaatttggtgatacactattccaagaagcatgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttgctt |
485 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11080231 |
ggggaatttggagatacactagtccaagaagcatgctccctccaagaatctcctaactttttcaaatcaacaagagaagatccacctcctcctcttgctt |
11080132 |
T |
|
| Q |
486 |
ccttagcacatattttcattttcaaaatcctctctttaatctcctttccatggtccgattcgctcaattccttagctctctctcccaac |
574 |
Q |
| |
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||||||||| ||||||||| |||||||| ||||| ||| ||| || || | || ||||| |||| |||||| ||||||| |||||| |
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| T |
11080131 |
ccttagcacttattttcatcttcaaaattgtctctctaacctctttccccttttctgattccatcaactccttaactctctcccccaac |
11080043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 386 - 574
Target Start/End: Complemental strand, 11003090 - 11002902
Alignment:
| Q |
386 |
ggggaatttggtgatacactattccaagaagcatgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttgctt |
485 |
Q |
| |
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||||||||||| |||| |||| || ||||||||||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||||||||| |||| | |
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| T |
11003090 |
ggggaatttggagataaactagtcaaagaagcatgctccctccaagaatctcctaaccttttcaaatcaacaagagaagatccacctcctccttttgcct |
11002991 |
T |
|
| Q |
486 |
ccttagcacatattttcattttcaaaatcctctctttaatctcctttccatggtccgattcgctcaattccttagctctctctcccaac |
574 |
Q |
| |
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||||||||| | ||||||| |||||||| ||||| ||||||| || || | || ||||| |||| |||||| ||||||| |||||| |
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| T |
11002990 |
ccttagcacttgttttcatcttcaaaattgtctctctaatctctttccctttttctgattccatcaactccttaactctctcccccaac |
11002902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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