View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13890_low_2 (Length: 544)
Name: NF13890_low_2
Description: NF13890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13890_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 11050872 - 11050339
Alignment:
| Q |
1 |
ataagtatcgttatgtcttatactaatttgttttattatagttgtgctttattgatnnnnnnnntatagcatctcttgcatcaaaatctattgattataa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11050872 |
ataagtctcgttatgtcttatactaatttgttttattatagttgtgctttattgataaaaaaaatatagcatctcttgcatcaaaatctattgattataa |
11050773 |
T |
|
| Q |
101 |
ggtggttaaaaattaaaattgacatattagcttatgaaagacatactattatgtcatgaagcaaagagcagccacacatannnnnnnnatcagaaaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| ||| |||||||| |
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| T |
11050772 |
ggtggttaaaaattaaaattgacatattagcttatgacagacatactattatgtgatgacgcaaagagcagccacacatattttttt-atcggaaaataa |
11050674 |
T |
|
| Q |
201 |
ttccnnnnnnngatacggcatat--gatacatgaacatcattcttcatgacataaaaaagatactactaattttaattcacatctcaatgtaatacacat |
298 |
Q |
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|||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11050673 |
ttccaaaaaaagatacgacatatatgatacatgaacatcattcttcatgacataaaaaagatactactaattttaattcacatctcaatgtaatacacat |
11050574 |
T |
|
| Q |
299 |
atttataannnnnnn-attggcatggacacacttttcgaattttattccctctaaagatctatttctaattttcaacgaagaaggaaaggggaatttggt |
397 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| | |
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| T |
11050573 |
atttataattttttttattggcatggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaagtgaaatttgat |
11050474 |
T |
|
| Q |
398 |
gataaactattccaagaagcatcctctctttaatatcctttccatggtccgattccatcaattccttaactctctcacccaactctgtgccactcacaaa |
497 |
Q |
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| T |
11050473 |
gataaactattccaagaagcatcctctctttaatat-ctttcca-------attccatcaactccttaactctctcacccaattctgcgccactcacaaa |
11050382 |
T |
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| Q |
498 |
cctattttctgattggttcactttcaaagccaccttcatttca |
540 |
Q |
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| T |
11050381 |
cctattttctgattggttcacttttaaagccaccttcatttca |
11050339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 84 - 419
Target Start/End: Complemental strand, 11019773 - 11019438
Alignment:
| Q |
84 |
aaatctattgattataaggtggttaaaaattaaaattgacatattagcttatgaaagacatactattatgtcatgaagcaaagagcagccacacatannn |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11019773 |
aaatctattgattataaggtggttaaaaattaaaattgacatattagcttatcacagacatactattatgtcataaagcaaagagcagccacacatattt |
11019674 |
T |
|
| Q |
184 |
nnnnnatcagaaaataattccnnnnnnngatacggcatatgatacatgaacatcattcttcatgacataaaaaagatactactaattttaattcacatct |
283 |
Q |
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| T |
11019673 |
tttt-atcagataataattctgaaaaaagatacgacatatgatgcatgaacatcattcttcatgacataaaaaagatactactaattttgattcacatct |
11019575 |
T |
|
| Q |
284 |
caatgtaatacacatatttataannnnnnn-attggcatggacacacttttcgaattttattccctctaaagatctatttctaattttcaacgaagaagg |
382 |
Q |
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| T |
11019574 |
caatataatacacatatttataattttttttattagcatggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaagg |
11019475 |
T |
|
| Q |
383 |
aaaggggaatttggtgataaactattccaagaagcat |
419 |
Q |
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| T |
11019474 |
aaaggggaatttggtgataaactattccaagaagcat |
11019438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 418 - 540
Target Start/End: Complemental strand, 11019345 - 11019223
Alignment:
| Q |
418 |
atcctctctttaatatcctttccatggtccgattccatcaattccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
517 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11019345 |
atcctctctttaatatcctttccacggtccgattccatcaactccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
11019246 |
T |
|
| Q |
518 |
ctttcaaagccaccttcatttca |
540 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
11019245 |
ctttcaaagccaccttcatttca |
11019223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 499
Target Start/End: Complemental strand, 11002934 - 11002883
Alignment:
| Q |
448 |
gattccatcaattccttaactctctcacccaactctgtgccactcacaaacc |
499 |
Q |
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| T |
11002934 |
gattccatcaactccttaactctctcccccaactcatttccactcacaaacc |
11002883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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