View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13890_low_3 (Length: 461)
Name: NF13890_low_3
Description: NF13890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13890_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 8926993 - 8926548
Alignment:
| Q |
16 |
gatgccaccagcatctgtgtgcgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaacttttgtaccaaaatttggacccttt |
115 |
Q |
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| T |
8926993 |
gatgccaccagcatctgtgtgtgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaacttttgtaccaaaatttggacccttt |
8926894 |
T |
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| Q |
116 |
gatccataaaacactttcttcaagtaccctttctcaagttcaagattctcacacaataagtcaagaagttcctctgccagtttctccaatttctctgcaa |
215 |
Q |
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| T |
8926893 |
gatccataaaacactttcttcaagtaccctttctcaagtccaagattctcacacaataagtcaagaagttcctctgccagtttctccaatttctctgcaa |
8926794 |
T |
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| Q |
216 |
attccttcattgtcttcctgaaattcacaaagatataaatatatgagtttaagtatatgattttatatgtgtgactttagaaataattataatagtaann |
315 |
Q |
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| T |
8926793 |
attccttcattgtcttcctgaaattcacaaagatataaatatatgagtttaagtatatgattttatatgtgtgactttagaaataattataatagtaatt |
8926694 |
T |
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| Q |
316 |
nnnnnnacgctgatggtgtatatgaattaaatactaaatatatattttaacaaaacattaaaatatgtgacctgtaatcttcatcaagatctgggatctc |
415 |
Q |
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| T |
8926693 |
ttttttacgctgacagtgtatatgaattaaatactaaatatatattttaacaaaacattaaaatatgtgacctgtaatcttcatcaagatctgggatctc |
8926594 |
T |
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| Q |
416 |
tgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcc |
461 |
Q |
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| T |
8926593 |
tgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcc |
8926548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 55523724 - 55523582
Alignment:
| Q |
98 |
ccaaaatttggaccctttgatccataaaacactttcttcaagtaccctttctcaagttcaagattctcacacaataagtcaagaagttcctctgccagtt |
197 |
Q |
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| T |
55523724 |
ccaaaatttggtcccttggatccatgaaagactttcttcaaataacctttctctagcccaagattctcacacagaaagtcaagaagtagctcagccaggt |
55523625 |
T |
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| Q |
198 |
tctccaatttctctgcaaattccttcattgtcttcctgaaatt |
240 |
Q |
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| T |
55523624 |
tctcaagttccactgcaaattccttcattatcttcctaaaatt |
55523582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 55528081 - 55527991
Alignment:
| Q |
17 |
atgccaccagcatctgtgtgcgctctaagtcccttgatgagatcaggcttaggacaaggagggtagttactaacttttgtaccaaaatttg |
107 |
Q |
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| T |
55528081 |
atgccaccagcatctgtatgggctctgagtcctttgataagatctggcttaggacaaggagggtagttgctaactttggttccaaaatttg |
55527991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 461
Target Start/End: Complemental strand, 55523373 - 55523295
Alignment:
| Q |
383 |
tgacctgtaatcttcatcaagatctgggatctctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcc |
461 |
Q |
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| T |
55523373 |
tgacctgtagtcatgatcaagatcagggatctctgatatgttaaagttaggaaggtggcgcaaaaagaaagtgctttcc |
55523295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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